PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000423445

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 32004.5 Da PI: 8.0711

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000423445	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.8e-19	144	198	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k MDP0000423445 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 198 78889************************************************98 PP
2	HD-ZIP_I/II	124.4	5.4e-40	144	233	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke eL+ +l MDP0000423445 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELIELK-AL 233 69************************************************************************************99.44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-18	130	194	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.97E-19	133	201	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.734	140	200	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	142	204	IPR001356	Homeobox domain
CDD	cd00086	7.54E-18	143	201	No hit	No description
Pfam	PF00046	2.2E-16	144	198	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	175	198	IPR017970	Homeobox, conserved site
SMART	SM00340	9.2E-25	200	243	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.2E-10	200	234	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGFDDHACNT GLVLGLGLTS SASXESSNPI XFAKNNIKPS LNSAPTSGAF EPSLTLGLFG 60 EPYHQQMVAS NIYKVGNSSQ EETVDLYRQA AAASSPHSHS AVSNSFSSGR VVKRERDISS 120 EEVEVDEKVS SRVSDEDEDG SNPRKKLRLT KEQSALLEES FKQHSTLNPK QKQALARQLN 180 LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELIEL KALKLSQPLY 240 MHMPAATLTM CPSCERIGGV GSEGSSKSPF SMAPKPHFYN HFTNPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	200	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11480	0.0	bud\| cell culture\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028950652.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-97	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A498HXZ7	0.0	A0A498HXZ7_MALDO; Uncharacterized protein
STRING	XP_009354594.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009354595.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-84	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000423445

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]