PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000420150
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 111aa    MW: 12554.6 Da    PI: 4.2459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000420150genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS41.71.8e-1328110157243
           GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                    +l ++g++L++fA+ l+++fef++ + +  ++l+ + ++++p+Eal  n++lql++l+de+ ++ +     Lkl ksl+ ++v++ e
  MDP0000420150  28 SLFTIGNQLQEFAKLLELHFEFEL-ILTPANELDESCFQLEPDEALDANFMLQLYNLFDEKPTMVN---YALKLAKSLKLQIVTLGE 110
                    56689******************9.7999*************************************...9**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.5381110IPR005202Transcription factor GRAS
PfamPF035146.2E-1128110IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MQTIAITHVF TSSEFRKLVI LGISLLTSLF TIGNQLQEFA KLLELHFEFE LILTPANELD  60
ESCFQLEPDE ALDANFMLQL YNLFDEKPTM VNYALKLAKS LKLQIVTLGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1920110151241GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371590.19e-37PREDICTED: scarecrow-like protein 4
RefseqXP_009371591.19e-37PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I01e-29SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A314YUF43e-33A0A314YUF4_PRUYE; Scarecrow-like protein 4
TrEMBLM5VW276e-33M5VW27_PRUPE; Uncharacterized protein
STRINGXP_009371590.13e-36(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.19e-19GRAS family protein