PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000394158

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 327aa MW: 35795.2 Da PI: 7.3563

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000394158	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	27	88	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++ ++++kl +++ ++V++WFqN++a+e++ MDP0000394158 27 STRWTPTTDQIKILKDLYYNngIRSPSAEQIHRISAKLrqygKIEGKNVFYWFQNHKARERQ 88 58***************8567***********************************97 PP
2	Wus_type_Homeobox	113	1.6e-36	26	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++QikiL++ly+ +G+r+P++e+i+ri+a+L++yGkie+kNVfyWFQN+kaRerqk+ MDP0000394158 26 SSTRWTPTTDQIKILKDLYYnNGIRSPSAEQIHRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 90 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-12	19	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.349	23	89	IPR001356	Homeobox domain
SMART	SM00389	7.3E-5	25	93	IPR001356	Homeobox domain
CDD	cd00086	3.62E-7	28	90	No hit	No description
Pfam	PF00046	8.2E-17	28	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-7	28	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDPQQNPNEL LDGGNRQGGG VMCRQSSTRW TPTTDQIKIL KDLYYNNGIR SPSAEQIHRI 60 SAKLRQYGKI EGKNVFYWFQ NHKARERQKK RFTSSSTPDH HAAPPMPAVP PQADNIRQRS 120 SGFGIDINAT AAAAYEQLPI NHHSKYSNIS GSPAGFSSTS SSVGVNVSAG AQMGNYGYGS 180 MAMEKSFRDC SLSSGGSTST GHVGGSNYNN FNHNPGSWVG VDPYSSPYSI FDKKSPSKQV 240 FGDQENMTEE EYYNQQQASP EIETLPLFPM HGEDIHGFGN IKSSSMEGYY SGWYRSDGSN 300 DGGSRTSLEL SLNSYGHMAP DCFRSC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269\|PubMed:12208843}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT998806	0.0	KT998806.1 Pyrus betulifolia wox transport 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017191272.1	0.0	protein WUSCHEL-like
Swissprot	Q8LL11	2e-80	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A498HXZ1	0.0	A0A498HXZ1_MALDO; Uncharacterized protein
STRING	XP_009378227.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-49	WOX family protein

Link Out ? help Back to Top
Phytozome	MDP0000394158

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]