PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000373134
Common NameC2H2L26, LOC103440426
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 544aa    MW: 56761.8 Da    PI: 8.3328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000373134genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-056991123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  MDP0000373134 69 FVCEICSKGFQRDQNLQLHRRGH 91
                   89*******************88 PP
2zf-C2H215.64.6e-05145167123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC+ C+k +  +s+ k H++t+
  MDP0000373134 145 WKCERCSKKYAVQSDWKAHMKTC 167
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-66891No hitNo description
Gene3DG3DSA:3.30.160.606.6E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0366991IPR015880Zinc finger, C2H2-like
PfamPF128740.0346991No hitNo description
PROSITE profilePS5015710.8876991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.46E-6140166No hitNo description
SMARTSM0035577145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGELDNSSSP LLTVSTASGG EASLTSSTHE AMTHPEPQQK KKRNLPGMPD PEAEVIALSP  60
TTLLATNRFV CEICSKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY VCPETSCVHH  120
HPTRALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTLF  180
SRCVRDSFIT HRAFCDALAE ESAKTQTLVI GPDGSMNPNS NPTPSARSGV VASPPPPPHT  240
PSNTVVSPAL SIQSSDLPEN PIGLSPPAPA TSCLTTTAIS TTATATTSTG NCNNGSSVFA  300
SIFAPSSASA LIXQPPGPPQ TSXXSSFSNQ XSALGRPDGS TKISSVXEPT SLSLSSSLYL  360
SSNGSSLFPT PDQDHRNYAQ PAAMSATALL QKAAQMGAXT SNASLLRGLG LSTTSSPSQE  420
NSTTLQWNKE QESGGAAHVG AELGLELLST ANAAELTDLM MGPPSSFGGQ PMTRDLLGLS  480
IGNGGGGGAS AAGFSAFLNS FGGSGGALNV ATAYGSGGGG GGSSQRETWE GAQDRKPDRS  540
SLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34141208368Zinc finger protein JACKDAW
5b3h_F3e-34141208368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.221150.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280800.10.0zinc finger protein NUTCRACKER-like
TrEMBLA0A498HP060.0A0A498HP06_MALDO; Uncharacterized protein
TrEMBLD9ZIT60.0D9ZIT6_MALDO; C2H2L domain class transcription factor
STRINGXP_008377330.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-113C2H2-like zinc finger protein