PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000350023
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LSD
Protein Properties Length: 133aa    MW: 14583.2 Da    PI: 7.2861
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000350023genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.71.9e-134367125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg+Cr lL YPrGA++V C++C+tV
  MDP0000350023 43 CGSCRRLLKYPRGARHVECSCCQTV 67
                   ************************9 PP

2zf-LSD146.17.7e-1581105125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+C +lL+YP+GA sVRC++C++V
  MDP0000350023  81 CGSCAVLLMYPYGAASVRCSSCNFV 105
                    ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.1E-174070IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-114367IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.4E-1278107IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-1281105IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
DSNEEAQRRR MESKVDVDEA PQPELQSTAA QPSPPSEIAQ LVCGSCRRLL KYPRGARHVE  60
CSCCQTVNFV LEAHQVGQVK CGSCAVLLMY PYGAASVRCS SCNFVTEVGE HNKRPPWSVQ  120
QGQSPTPPNP VHX
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383900.11e-93protein LOL2-like isoform X1
SwissprotO654262e-42LOL2_ARATH; Protein LOL2
TrEMBLA0A498K1H37e-79A0A498K1H3_MALDO; Uncharacterized protein
STRINGXP_008383900.14e-93(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.17e-45lsd one like 2