PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000350023

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LSD

Protein Properties

Length: 133aa MW: 14583.2 Da PI: 7.2861

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000350023	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.7	1.9e-13	43	67	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YPrGA++V C++C+tV MDP0000350023 43 CGSCRRLLKYPRGARHVECSCCQTV 67 ************************9 PP
2	zf-LSD1	46.1	7.7e-15	81	105	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA sVRC++C++V MDP0000350023 81 CGSCAVLLMYPYGAASVRCSSCNFV 105 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.1E-17	40	70	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.2E-11	43	67	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.4E-12	78	107	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.4E-12	81	105	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
DSNEEAQRRR MESKVDVDEA PQPELQSTAA QPSPPSEIAQ LVCGSCRRLL KYPRGARHVE 60 CSCCQTVNFV LEAHQVGQVK CGSCAVLLMY PYGAASVRCS SCNFVTEVGE HNKRPPWSVQ 120 QGQSPTPPNP VHX

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008383900.1	1e-93	protein LOL2-like isoform X1
Swissprot	O65426	2e-42	LOL2_ARATH; Protein LOL2
TrEMBL	A0A498K1H3	7e-79	A0A498K1H3_MALDO; Uncharacterized protein
STRING	XP_008383900.1	4e-93	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	7e-45	lsd one like 2

Link Out ? help Back to Top
Phytozome	MDP0000350023