PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320006
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 579aa    MW: 63939 Da    PI: 8.7289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320006genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.1e-15490574292
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    +k +++s+v+   +l lpk f++++  +k ++  ++l de+g++ ev +  +k++    l++GW++F+ +++L +gD +vF+l++ ++ + 
  MDP0000320006 490 VKPMLQSHVTGGFWLGLPKYFCSKNL-PK-RDDIVILIDEDGNECEVIYLAEKRG----LSGGWRGFAIDHDLVDGDALVFQLIRPKTLKV 574
                    68999*****************9994.43.4558***************545554....9***********************98655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517352.77E-671274IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7201.1E-661327IPR016040NAD(P)-binding domain
PfamPF013705.3E-353237IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
CDDcd052289.77E-1263330No hitNo description
SuperFamilySSF517352.77E-67302330IPR016040NAD(P)-binding domain
SuperFamilySSF1019362.55E-20483575IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-17483575IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-22487576No hitNo description
PROSITE profilePS5086310.785489579IPR003340B3 DNA binding domain
SMARTSM010191.0E-16489575IPR003340B3 DNA binding domain
PfamPF023628.3E-13490573IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016487Biological Processfarnesol metabolic process
GO:0005774Cellular Componentvacuolar membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0047886Molecular Functionfarnesol dehydrogenase activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKILVTGASG YLGGRLCHAL LKQGHSVRAL VRPTSDLSSL PPPSSTGXAS LELVYGDVTD  60
YESLLSAFSN CDVVFHAAAV VEPWLPDPSK FFSVNVGGXK NVLRAVRETK TVQKIIYTSS  120
FFALGSTDGG VADETQVHHE KFFCTEYERS KAAADKIALR AAQQEELPLV LLYPGVIYGP  180
GKLTAGNVVA RLIVERFNGR LPGYIGSGND RYSFSHVDDV VEGHIRAMAK GRTGERYLLT  240
GENASFKHVF DVAAVITQTG RPKFGIPLWL IEVYGWASVL FSRVTGKLPL ISPPTVYVLR  300
HQWAYSCEKA KAELGYSPRG LKEGLGEQLQ PSLDINCPII NDIVDSQDVL PQHVSISTTA  360
YVPANTNRGA NTGRKAVDFP RLQNPIVQFS ERGASLNPNR IVFHMKRAKA RTVEKQLVEV  420
RXSSRVANLP TPVYKEVAVV DREMRPRRYS TNRHRDLSNR VYASDEARDD ATARAEAFES  480
DLGSDYPTMV KPMLQSHVTG GFWLGLPKYF CSKNLPKRDD IVILIDEDGN ECEVIYLAEK  540
RGLSGGWRGF AIDHDLVDGD ALVFQLIRPK TLKVXLQVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wj7_A1e-48432917332Putative oxidoreductase
3wj7_B1e-48432917332Putative oxidoreductase
3wj7_C1e-48432917332Putative oxidoreductase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365112.20.0uncharacterized protein LOC103428773
TrEMBLA0A498JD230.0A0A498JD23_MALDO; Uncharacterized protein
STRINGXP_008365112.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1133623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-42B3 family protein