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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000319342 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
GRAS |
| Protein Properties |
Length: 504aa MW: 55339.7 Da PI: 4.9669 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000319342 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 336.5 | 4.9e-103 | 116 | 494 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal....ppsetsekn....sseelaalklfs 85
lv+lL+++Aea++ +++ la+ +L rl+el+sp++ ++m+RlaayfteAL+ l + + k l + ++ + +++++aa++l++
MDP0000319342 116 LVHLLMAAAEALTGANKSrdLARVILFRLKELVSPTDgSNMERLAAYFTEALQGLLEGAGGLHGKNLigngAYRD----HghhpTDDVIAAFQLLQ 207
68**********997776669***********9987769******************955444444422114444....23456************ PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
++sP++kf+h+taNqaIleav++++rvH++D+di++G+QW++L+qaL sR+egpp +lRiT++++ sg s +++etg+rL+ fA ++g pf+
MDP0000319342 208 DMSPYVKFGHFTANQAILEAVAHDSRVHVVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGGSGrrSIGTVQETGRRLTAFAVSIGQPFS 303
***************************************************887666*********888898999********************* PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
f+ ++ e++++++L++ +gEal++n++l+l ++ +s+++ ++L+ k+l+P++v++ve+e+ +++ F++rf+++l++ysa++dsle
MDP0000319342 304 FHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFNYRSQDSIA---SFLSGSKTLNPRLVTLVEEEVRPaGDGGFVARFMDSLYHYSAVYDSLE 396
***9999*****************************966665555...9********************999************************ PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
a++p ++++r+ vEr++lg++i +a ++ ++e +W e+l+++GFkp+p+s + +qaklll ++ dgyr ee ++ lvlgWk+r L
MDP0000319342 397 AGFPMQNRARALVERVFLGPRIAGSLARIYRA---NEEVGCSWWEWLGAVGFKPMPISFANHCQAKLLLGLFN-DGYRAEEVaNHRLVLGWKSRCL 488
******************************99...778889********************************.******76488899******** PP
GRAS 368 vsvSaW 373
+s+S W
MDP0000319342 489 LSASIW 494
****** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 504 aa
Download sequence Send
to blast |
MAIAIDGHDL DLDLSGSSTT TTSTNTVSTD NWYNWSPVVD WDALEPTDHL TGEDFHGLIE 60
SMMEDQDGST EVNLSSAQNE HLELEASNDT TSSAEMMTLX DEDGSANGED SKGLRLVHLL 120
MAAAEALTGA NKSRDLARVI LFRLKELVSP TDGSNMERLA AYFTEALQGL LEGAGGLHGK 180
NLIGNGAYRD HGHHPTDDVI AAFQLLQDMS PYVKFGHFTA NQAILEAVAH DSRVHVVDYD 240
IMEGIQWASL MQALVSRKEG PPTPHLRITA LSRGGSGRRS IGTVQETGRR LTAFAVSIGQ 300
PFSFHQCRLD SDETFRPSAL KLVKGEALVI NCMLNLPHFN YRSQDSIASF LSGSKTLNPR 360
LVTLVEEEVR PAGDGGFVAR FMDSLYHYSA VYDSLEAGFP MQNRARALVE RVFLGPRIAG 420
SLARIYRANE EVGCSWWEWL GAVGFKPMPI SFANHCQAKL LLGLFNDGYR AEEVANHRLV 480
LGWKSRCLLS ASIWMSPSEX DVIN
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
