PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000319266

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 608aa MW: 63946.1 Da PI: 9.133

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000319266	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.9	5e-40	200	337	3	116
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai++ tgt++++a+++ + s +ss+s+ s++ MDP0000319266 200 VAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEHAIIATTGTGTIPANFStLNISLRSSGSTLSAPpsksaphsf 295 689*****************************************************************9998888888888866666677778999 PP TCP 89 ........................kaaksaakskksqksaasalnlakesra 116 + +q++++++++ +++ ++ MDP0000319266 296 pgalalahhpxydegfahsgllgfH----------QQHQQQQHQQHHHQPHQ 337 9999999999998765544444331..........33333333333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-39	204	338	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.342	205	259	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MLTCAVSLLP XLPSTGTNWT HPPTPSPSDI XNLPFAPEGI NVSVKKADSY HSFHQTPRLE 60 GGGRRAEXGG RRTEXGEIFL RRXRGRRRTP LSVGSISIQA GLTTTSHSTP PPPPTSAPSS 120 SSFSSSSSTS SPSSTSTSAA PPPHLVDASL AIATRSDPHP PTRPASLLDS AKNNQTQQQL 180 TISPATTSPP SAXAAPATQV AKRSTKDRHT KVEGRGRRIR MPATCAARVF QLTRELGHKS 240 DGETIEWLLQ QAEHAIIATT GTGTIPANFS TLNISLRSSG STLSAPPSKS APHSFPGALA 300 LAHHPXYDEG FAHSGLLGFH QQHQQQQHQQ HHHQPHQSPL MTADQIAEAL PSGGGDSAGG 360 GGGESTENYM RKRFREDLFK DDNQGQGESG SGDGGGSPSR NKAFKGASSG GLQXPKQQQQ 420 GAEVGSSGVL RPSSILPATA MWAVAPAPTS GAGNTFWMLP VTAGPGVPSM AXATFGAGPS 480 EAAQMWTFPS STASHGSTLQ APMHFMPRFN LPSSLEFQQA AAGGRGSPLQ LGSMLMQQPP 540 SQHLGLGVSD SNLGMLAALN AYSRGGLNMN SDQHQQNHHH PLDHHHQEQQ QHQPQTXDSG 600 DEAPNSSQ

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MLTCAVSLLP XLPSTGTNWT HPPTPSPSDI XNLPFAPEGI NVSVKKADSY HSFHQTPRLE  60
GGGRRAEXGG RRTEXGEIFL RRXRGRRRTP LSVGSISIQA GLTTTSHSTP PPPPTSAPSS  120
SSFSSSSSTS SPSSTSTSAA PPPHLVDASL AIATRSDPHP PTRPASLLDS AKNNQTQQQL  180
TISPATTSPP SAXAAPATQV AKRSTKDRHT KVEGRGRRIR MPATCAARVF QLTRELGHKS  240
DGETIEWLLQ QAEHAIIATT GTGTIPANFS TLNISLRSSG STLSAPPSKS APHSFPGALA  300
LAHHPXYDEG FAHSGLLGFH QQHQQQQHQQ HHHQPHQSPL MTADQIAEAL PSGGGDSAGG  360
GGGESTENYM RKRFREDLFK DDNQGQGESG SGDGGGSPSR NKAFKGASSG GLQXPKQQQQ  420
GAEVGSSGVL RPSSILPATA MWAVAPAPTS GAGNTFWMLP VTAGPGVPSM AXATFGAGPS  480
EAAQMWTFPS STASHGSTLQ APMHFMPRFN LPSSLEFQQA AAGGRGSPLQ LGSMLMQQPP  540
SQHLGLGVSD SNLGMLAALN AYSRGGLNMN SDQHQQNHHH PLDHHHQEQQ QHQPQTXDSG  600
DEAPNSSQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.28657	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963233.1	0.0	transcription factor TCP8
TrEMBL	A0A498J986	0.0	A0A498J986_MALDO; Uncharacterized protein
STRING	XP_008365311.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-72	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000319266