PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000319225 | ||||||||
Common Name | C2H2L23, LOC103428118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 26105.8 Da PI: 8.6054 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H MDP0000319225 95 YKCSVCNKGFSSYQALGGHKASH 117 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 90 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.56E-9 | 95 | 170 | No hit | No description |
PROSITE profile | PS50157 | 10.533 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-13 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0099 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-13 | 147 | 172 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MALEALKSAS TTTNTSPPFS SFEEADDRRQ ANHQIHSKEP WAKRKRSKRP RSEDPPTEEE 60 YLALCLIMLA RGTTAAVTTS SSESPAQPPS GELSYKCSVC NKGFSSYQAL GGHKASHRKS 120 DSSAAAAATV DHPIAAASAG PATSARTHEC SICHKTFPTG QALGGHKRCH YDGGSAVTTS 180 EGGGAGASSH SQSQSHQSQR GFDLNLPALP EFWPGFGADK KSQLSGEQEV QSPMVAKKPR 240 WLLGRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13134 | 0.0 | leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315818.1 | 0.0 | zinc finger protein ZAT10-like | ||||
TrEMBL | D9ZIT3 | 1e-180 | D9ZIT3_MALDO; C2H2L domain class transcription factor | ||||
STRING | XP_008364438.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-38 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | MDP0000319225 |
Entrez Gene | 103428118 |