PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000318244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23040.1 Da PI: 5.5967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 7e-43 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+lapyfp ++p+kf ++h++FGasn++kll++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+ MDP0000318244 46 PCAACKILRRRCADKCILAPYFPPSEPAKFTIAHRVFGASNIIKLLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAK 141 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MDP0000318244 142 AQAE 145 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.19 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-43 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MECSTETMNT NYTTTSSTMS QSPPSSSPSS PPTLTPTPSP PVVVSPCAAC KILRRRCADK 60 CILAPYFPPS EPAKFTIAHR VFGASNIIKL LQELPESQRA DAVSSMVYEA SARIRDPVYG 120 CAGAICHLQK QVNELQAQLA KAQAEVVNMQ CQQANLVTLI CMEMSQPNSE QGSPPQSLDH 180 NFITNIPHGG NQTNLGFLDD STTLGSLWDP LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 37 | 153 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 37 | 153 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11506 | 0.0 | cell culture| fruit| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008363479.1 | 1e-158 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-77 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A498KG04 | 1e-156 | A0A498KG04_MALDO; Uncharacterized protein | ||||
STRING | XP_008358286.1 | 1e-157 | (Malus domestica) | ||||
STRING | XP_008363479.1 | 1e-157 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 6e-68 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000318244 |