PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000317950
Common NameAP2D31
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 278aa    MW: 31086.1 Da    PI: 5.0879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000317950genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-20129179255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +++GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g
  MDP0000317950 129 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEGAALAYDQAAFKIRG 179
                    69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-30128189No hitNo description
SMARTSM003804.4E-38129193IPR001471AP2/ERF domain
PROSITE profilePS5103223.775129187IPR001471AP2/ERF domain
PfamPF008471.9E-13129179IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22129188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-31129188IPR001471AP2/ERF domain
PRINTSPR003671.3E-12130141IPR001471AP2/ERF domain
PRINTSPR003671.3E-12169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MFEDICLVSD FSLLESIRQH LLDDNFDTTL QELSPTASGS PPPMHSQSLS FSTLFSTESW  60
XDMPFKVELE DTNDVVGSLS DGTDEWSPSS DHHHVDVIES TPVKPEPWEV VREEIVVVRE  120
THTPXSRQHF RGVRRRPWGK YAAEIRDPKK NGARVWLGTY ETAEGAALAY DQAAFKIRGX  180
KAKLNFPHLI GSEGCEPVRV TXKRRXPEFS TSSSSSESGS PKPKRRNIGL RTAAEAESGS  240
TSRXEMVEMS QXAAVDQWLX DLNTTXSPMX HELLISGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29128187160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-29128192468ATERF1
3gcc_A2e-29128192468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.270280.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324550.0GU732455.1 Malus x domestica AP2 domain class transcription factor (AP2D31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335578.11e-170PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_009335605.11e-170PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLD5L1150.0D5L115_MALDO; AP2 domain class transcription factor
STRINGXP_009335578.11e-169(Pyrus x bretschneideri)
STRINGXP_009335605.11e-169(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-43ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]