PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000317932
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 265aa    MW: 29499.2 Da    PI: 8.4707
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000317932genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20135184255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f +aeeAa+a+++a+ +++g
  MDP0000317932 135 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFTSAEEAARAYDKAAIEFRG 184
                    59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-22135193IPR016177DNA-binding domain
PROSITE profilePS5103225.093135192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32135192IPR001471AP2/ERF domain
SMARTSM003802.5E-37135198IPR001471AP2/ERF domain
CDDcd000186.31E-34135192No hitNo description
PfamPF008471.0E-13135184IPR001471AP2/ERF domain
PRINTSPR003671.4E-11136147IPR001471AP2/ERF domain
PRINTSPR003671.4E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQPSYKRFKP SDSQPAHSAP PPFQPLPPLP RLTQDQEYTV IVSALQNVVA GTATAASVDL  60
NSLLPPLQRA STFSPRYTTS TSCSSNTLLV PSDLDTCHEC KIKGCLGCTL FPPAAQEEKG  120
SSNNKKGPKK RVKKNYRGVR QRPWGKWAAE IRDPRRATRV WLGTFTSAEE AARAYDKAAI  180
EFRGPRAKLN FPFPDTTLVT QESNSSQPQQ QQVVTEQRNK NVEFPGEVET TGIMKENELL  240
EEDFQQWMMM LDATDNSSDS GNVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23134193161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952273.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF071-like
RefseqXP_028965466.10.0ethylene-responsive transcription factor ERF071-like
SwissprotQ9SZ061e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A498IXL00.0A0A498IXL0_MALDO; Uncharacterized protein
STRINGXP_009365682.11e-154(Pyrus x bretschneideri)
STRINGXP_009365683.11e-154(Pyrus x bretschneideri)
STRINGXP_009365684.11e-154(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-30redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]