PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000317825
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 536aa    MW: 60753.1 Da    PI: 4.3736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000317825genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.49.2e-371665332374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ++ e ++ g+ el   ++  l e ++p g++++Rla+ + ++     ++      + l+ ++       +  aa++lf++++P+ +++h +
  MDP0000317825 166 HHLLKAFSESMEMGQRELELVIMRCLAEKVNPLGQSLERLAFNLCQGFVDNQHG------NYLKQES-----FNNFEAAFNLFYQIFPFGRLAHYA 250
                    578888889999999999999**************************9998888......3333333.....45777899**************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrl 186
                    aN aIle++ ++ e+vH++ fdi++G+Q   L++a a+R++    l++T+++   ++       + + eet+++L++ A+++g++++ + +   ++
  MDP0000317825 251 ANTAILESIPEDvETVHVVEFDIGEGVQLSHLIEAVAKRNKT---LKVTAIKWDVEEsdevapPQWRFEETKKQLQHHARSFGLNLKVEEI---AI 340
                    *********9998**************************765...******976555668899999***********************99...44 PP

           GRAS 187 edleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfds 270
                    edl ++e++  +     +E +a n+++ l ++   +  ++    e+L+l k+l ++    +v + +    +++ n+ sF   f   + +y al++s
  MDP0000317825 341 EDL-VSEIKKANkrggmREFIAFNSMVGLPHMR--RRRSRGLVMEFLRLAKDLLANsargIVXFGDGYacTKRgNDLSFRSFFDVNVVHYKALLES 433
                    455.4444333334566*************997..333444568********9654333355555554533447899******************* PP

           GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkd 364
                    le+++p++  e+r+++E +++++ +++     + + +er+       +    +G+++ ++s ++ ++ak ++   +s g rv  e+ +++ l W++
  MDP0000317825 434 LESTFPSHLgEARMVMELMFVAPYVSSQAWLDKWN-EERE-----CGNLQPLFGLESRRVSREMLMEAKEIVGADSSYGVRVGgENGNEMALEWNS 523
                    ******999899*******9999999988888877.3333.....34556789*****************************966677888***** PP

           GRAS 365 rpLvsvSaWr 374
                     pLv v  W+
  MDP0000317825 524 IPLVRVETWT 533
                    ******9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.022139512IPR005202Transcription factor GRAS
PfamPF035143.2E-34166533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MMQSEMNFQS LWPYLNVTNS PMDTNEYNDQ MASTEFSSIF MASDEFSESS PFPFSTIFSG  60
ECEQFADCDN LLQATSMAAE EFPMELGGFE PNFFIDQYEN MYASCLEGSE GSNTLPSQQF  120
SVEGNDVWSP NSFVTSEASS IDVTSVQQSL TLPRDDMEID NEVSIHHLLK AFSESMEMGQ  180
RELELVIMRC LAEKVNPLGQ SLERLAFNLC QGFVDNQHGN YLKQESFNNF EAAFNLFYQI  240
FPFGRLAHYA ANTAILESIP EDVETVHVVE FDIGEGVQLS HLIEAVAKRN KTLKVTAIKW  300
DVEESDEVAP PQWRFEETKK QLQHHARSFG LNLKVEEIAI EDLVSEIKKA NKRGGMREFI  360
AFNSMVGLPH MRRRRSRGLV MEFLRLAKDL LANSARGIVX FGDGYACTKR GNDLSFRSFF  420
DVNVVHYKAL LESLESTFPS HLGEARMVME LMFVAPYVSS QAWLDKWNEE RECGNLQPLF  480
GLESRRVSRE MLMEAKEIVG ADSSYGVRVG GENGNEMALE WNSIPLVRVE TWTNGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.45012e-97fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507385.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A498K1N20.0A0A498K1N2_MALDO; Uncharacterized protein
STRINGXP_008370546.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-16GRAS family protein