PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000317825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 536aa MW: 60753.1 Da PI: 4.3736 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 118.4 | 9.2e-37 | 166 | 533 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL ++ e ++ g+ el ++ l e ++p g++++Rla+ + ++ ++ + l+ ++ + aa++lf++++P+ +++h + MDP0000317825 166 HHLLKAFSESMEMGQRELELVIMRCLAEKVNPLGQSLERLAFNLCQGFVDNQHG------NYLKQES-----FNNFEAAFNLFYQIFPFGRLAHYA 250 578888889999999999999**************************9998888......3333333.....45777899**************** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrl 186 aN aIle++ ++ e+vH++ fdi++G+Q L++a a+R++ l++T+++ ++ + + eet+++L++ A+++g++++ + + ++ MDP0000317825 251 ANTAILESIPEDvETVHVVEFDIGEGVQLSHLIEAVAKRNKT---LKVTAIKWDVEEsdevapPQWRFEETKKQLQHHARSFGLNLKVEEI---AI 340 *********9998**************************765...******976555668899999***********************99...44 PP GRAS 187 edleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfds 270 edl ++e++ + +E +a n+++ l ++ + ++ e+L+l k+l ++ +v + + +++ n+ sF f + +y al++s MDP0000317825 341 EDL-VSEIKKANkrggmREFIAFNSMVGLPHMR--RRRSRGLVMEFLRLAKDLLANsargIVXFGDGYacTKRgNDLSFRSFFDVNVVHYKALLES 433 455.4444333334566*************997..333444568********9654333355555554533447899******************* PP GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkd 364 le+++p++ e+r+++E +++++ +++ + + +er+ + +G+++ ++s ++ ++ak ++ +s g rv e+ +++ l W++ MDP0000317825 434 LESTFPSHLgEARMVMELMFVAPYVSSQAWLDKWN-EERE-----CGNLQPLFGLESRRVSREMLMEAKEIVGADSSYGVRVGgENGNEMALEWNS 523 ******999899*******9999999988888877.3333.....34556789*****************************966677888***** PP GRAS 365 rpLvsvSaWr 374 pLv v W+ MDP0000317825 524 IPLVRVETWT 533 ******9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.022 | 139 | 512 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-34 | 166 | 533 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MMQSEMNFQS LWPYLNVTNS PMDTNEYNDQ MASTEFSSIF MASDEFSESS PFPFSTIFSG 60 ECEQFADCDN LLQATSMAAE EFPMELGGFE PNFFIDQYEN MYASCLEGSE GSNTLPSQQF 120 SVEGNDVWSP NSFVTSEASS IDVTSVQQSL TLPRDDMEID NEVSIHHLLK AFSESMEMGQ 180 RELELVIMRC LAEKVNPLGQ SLERLAFNLC QGFVDNQHGN YLKQESFNNF EAAFNLFYQI 240 FPFGRLAHYA ANTAILESIP EDVETVHVVE FDIGEGVQLS HLIEAVAKRN KTLKVTAIKW 300 DVEESDEVAP PQWRFEETKK QLQHHARSFG LNLKVEEIAI EDLVSEIKKA NKRGGMREFI 360 AFNSMVGLPH MRRRRSRGLV MEFLRLAKDL LANSARGIVX FGDGYACTKR GNDLSFRSFF 420 DVNVVHYKAL LESLESTFPS HLGEARMVME LMFVAPYVSS QAWLDKWNEE RECGNLQPLF 480 GLESRRVSRE MLMEAKEIVG ADSSYGVRVG GENGNEMALE WNSIPLVRVE TWTNGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.4501 | 2e-97 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018507385.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A498K1N2 | 0.0 | A0A498K1N2_MALDO; Uncharacterized protein | ||||
STRING | XP_008370546.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4274 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 3e-16 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000317825 |