PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000316694
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 365aa    MW: 41087.7 Da    PI: 9.3385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000316694genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20176225255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  MDP0000316694 176 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAAIAYDNAALKFKG 225
                    7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32175234IPR001471AP2/ERF domain
PfamPF008471.8E-12176225IPR001471AP2/ERF domain
CDDcd000181.61E-32176234No hitNo description
SMARTSM003801.0E-38176239IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22176234IPR016177DNA-binding domain
PROSITE profilePS5103224.658176233IPR001471AP2/ERF domain
PRINTSPR003672.3E-11177188IPR001471AP2/ERF domain
PRINTSPR003672.3E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGLTVKRILV QVLLASFDNR AEAHSYMCLR PHVPIYKSLT WNRTTCKKVR NGIQAKKFTQ  60
ASSYKLRYTH IRSSSSPGLK VDRRHGKRPL PSEASEEKER EDHPHLHDFP SNYESSWTEA  120
DMSAMVSALT QVIGTTDDHA AVQPNPTSIS DSSLLVKQEP DRSQPVQDQE PVRRRHYRGV  180
RQRPWGKWAA EIRDPKKAAR VWLGTFETAE DAAIAYDNAA LKFKGTKAKL NFPERVQGKT  240
DLGILMGSSG SGAASTQRTQ NLMTPAGHIV NPQPAPAPLM MSQQPETFPD LYQYARLLSG  300
NDADFYNYSS YPFNQDPRFT SRFLPSSTHF SSSTASQDSQ PPQQGQQDHE EDGGNEDRNW  360
SNPRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26175236466ATERF1
3gcc_A2e-26175236466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146360.0cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065830.0KM506583.1 Eriobotrya japonica transcription factor ERF17 (ERF17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369624.10.0ethylene-responsive transcription factor ERF113
TrEMBLA0A498HQH80.0A0A498HQH8_MALDO; Uncharacterized protein
STRINGXP_008369624.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.15e-32ERF family protein