PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000314617

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 404aa MW: 45868.6 Da PI: 9.4248

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000314617	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	153.3	4.4e-48	4	99	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqd +lPianv+rimk++lP +akisk+ak+t+qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++ yl+kyre+e++k MDP0000314617 4 QEQDGMLPIANVGRIMKQILPPRAKISKEAKQTMQECATEFLSFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAQATIRYLHKYREAERDK 99 69********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-45	4	112	IPR009072	Histone-fold
SuperFamily	SSF47113	8.22E-36	6	113	IPR009072	Histone-fold
Pfam	PF00808	1.2E-24	10	73	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.8E-15	37	55	No hit	No description
PRINTS	PR00615	7.8E-15	56	74	No hit	No description
PRINTS	PR00615	7.8E-15	75	93	No hit	No description
SMART	SM00343	0.008	205	221	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	9.488	205	220	IPR001878	Zinc finger, CCHC-type
Pfam	PF13976	4.8E-10	316	368	IPR025724	GAG-pre-integrase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MVDQEQDGML PIANVGRIMK QILPPRAKIS KEAKQTMQEC ATEFLSFVTG EASDKCHKEN 60 RKTVNGDDIC WALSALGFDN YAQATIRYLH KYREAERDKA AANNNQNTAD IKSYGGLQQI 120 RMKIIFRSHE LWDIVENDVE TSAKKDEELI GFKPQKNWKS KWKKGDNKPV NQAGKAVSTS 180 EGAKNPCIHC DKLHFGECWF KDKPRCHNCH KLGHIAKDCR GKKVEMGTGQ LIEVIGKGNL 240 AVETKMVKRY IKEVMLVPGL QENLFNVGQM MEHGCFLVFG GTTAAIYDDE SMSNLIAKVP 300 MKGNRSFPMR LQSGMQMALK ANVCQSSTLW HRRLGHLNLN SLKQLKEHDM MLGLPKLKMT 360 YEICKGCVFX XALQRCISKG SIMESYSSSR TYSLRYMWTY ANHN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MVDQEQDGML PIANVGRIMK QILPPRAKIS KEAKQTMQEC ATEFLSFVTG EASDKCHKEN  60
RKTVNGDDIC WALSALGFDN YAQATIRYLH KYREAERDKA AANNNQNTAD IKSYGGLQQI  120
RMKIIFRSHE LWDIVENDVE TSAKKDEELI GFKPQKNWKS KWKKGDNKPV NQAGKAVSTS  180
EGAKNPCIHC DKLHFGECWF KDKPRCHNCH KLGHIAKDCR GKKVEMGTGQ LIEVIGKGNL  240
AVETKMVKRY IKEVMLVPGL QENLFNVGQM MEHGCFLVFG GTTAAIYDDE SMSNLIAKVP  300
MKGNRSFPMR LQSGMQMALK ANVCQSSTLW HRRLGHLNLN SLKQLKEHDM MLGLPKLKMT  360
YEICKGCVFX XALQRCISKG SIMESYSSSR TYSLRYMWTY ANHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-36	4	94	2	92	Transcription factor HapC (Eurofung)
4g92_B	9e-36	4	94	2	92	Transcription factor HapC (Eurofung)

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	8e-51	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	MDP0000314617