PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314058
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 568aa    MW: 64096.4 Da    PI: 7.5419
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314058genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.5e-13952144
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   k+i nk   + tfskRr+g++ KA  L+ L++a  avi fs+ +
  MDP0000314058  9 KKITNKNYLKATFSKRRKGLFRKATDLCCLTGATLAVIAFSPGN 52
                   679999999********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.432161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-20171IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-19160IPR002100Transcription factor, MADS-box
CDDcd002664.66E-21274No hitNo description
PRINTSPR004044.0E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-151057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-93859IPR002100Transcription factor, MADS-box
SuperFamilySSF577568.9E-5374420IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.521403417IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGKNKIDIKK ITNKNYLKAT FSKRRKGLFR KATDLCCLTG ATLAVIAFSP GNNPFLFGHP  60
SAESVIDRFL GEQARCASDD GGEEVLGSAS AGNEHQDLES SREEVKEGSD VMDEEKGSLW  120
WEKPIEEGLE LPELKKYKSL LERLRENAAI KLDEMNRREL CTKDYLGLNF EIGSSSSTPA  180
DERDNSGCLS NFVVRPINYK CETLCAGRSI FLKFRARCQS IGQSIRFSII LSRFLLHHFK  240
FGGPSVDRFG HVMTHDDWSR IQSYNSCLWL EPLVGRVDGP FVGTCDGFEV VLTKLFLGSL  300
GWGWIVMEVV ASLKSFELRL DRHAENSTER AFASLNVGGK NPKGVGYSGN QKFQKNWKSK  360
GKKWDNKPNF VQKPNVSNDG NKIACRHCDK LHYGKCWFEG KPKCTSCGKL GHVIRDCHGN  420
KNIQKVNYVN QVEETGYGIC EKGYXVFDPS SSKIILSRDV HFDENASWEW ENTDKSEIQV  480
PMIAENQMAD CSKGQKQVEI CEPSQFLDTS TQVEDVITPL SENVFESSQT TDYTPQKWRS  540
VNEIMSFSFG LKRDLLILRM LNGDKFPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25AGAMOUS-like 61