PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311848
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 673aa    MW: 71360.9 Da    PI: 7.3425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311848genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10275322147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 
                      r++W++ Ed+ l+ av+++G g+W+ I r      Rt+ q+  rw + 
    MDP0000311848 275 RKKWSEAEDLELIAAVQKYGEGNWANILRGDFkGDRTPSQLAQRWKNI 322
                      789************************9852236***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.59270327IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-14271326IPR009057Homeodomain-like
SuperFamilySSF466892.37E-13271325IPR009057Homeodomain-like
SMARTSM007172.5E-11274325IPR001005SANT/Myb domain
PfamPF002492.7E-9275322IPR001005SANT/Myb domain
CDDcd116603.02E-15276324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MLEKAKDPKK GFITEEDTAT LLQRYLLPLS HRFQYVAYIF VLFGELGLII NVGFSFFALL  60
MGRYAPTTVL ALLQEVANSP DGKIDWNRLV AKTSTGISNA REYQMLWRHL AYREALLDKL  120
DNGAQPLDDD SDLEYEVESF PAVSAEASTE AAACAKASGF ITSDLTGKQN GGLNVGTPMA  180
FDYVLTWVLI SSGLSSDASH QNGLTVEGPL SMNLPNGQSS RSHQNSQAAC SMQGKNITVP  240
ISVLKNPLPA VAASTVETIE GDDALGNGMA PRKRRKKWSE AEDLELIAAV QKYGEGNWAN  300
ILRGDFKGDR TPSQLAQRWK NIRKNNLDLN VGGGSSSKLS EAQLAARHSL SVALNMPNIT  360
ANTIGTAGTS THSKLAGTNA TSNSVHCTTA EAKPQSQQGL NPVKTYQTGL SGSTTKAPVI  420
AKKTIPKLTD SMVRAAAVAA GARIAFPSDA ASLLKAAQAK NAVHIMPTSG SSTQSVKPGG  480
MSTHSELPPN VHIMRSSSAA TPLSTPSSTA ATPGTTRPRS SKVLPQASQH TPTSDAMLSR  540
QTNGVSCNLD AEPGCAPTDQ IQDGAVISRD GPNDRVQKDK SPDQKAHSKN LSTNAENPVD  600
SLKVESDETD SKAVTGVKAE ERKSAKDNEI PCSSANVGGS DPSAVDSCET EAQVRSTQIF  660
SPLQQMDARE NRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338949.10.0uncharacterized protein LOC103401989 isoform X2
TrEMBLA0A498HSV60.0A0A498HSV6_MALDO; Uncharacterized protein
STRINGXP_008338947.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-60MYB_related family protein