PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311737
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 691aa    MW: 78002.9 Da    PI: 7.8885
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311737genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-085276126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   ykt+lC +f   G C+ G++C++aHg
  MDP0000311737 52 YKTRLCVNFKS-GMCRNGENCNYAHG 76
                   9********99.*************8 PP
2zf-CCCH27.26.6e-09114136325
                    S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                    ++lC+ f+ + +C+yGdrC+F H
  MDP0000311737 114 MKLCKKFYNGEECPYGDRCNFLH 136
                    689******66************ PP
3zf-CCCH41.13e-13195220126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ +  tG C++G++C+FaHg
  MDP0000311737 195 WKTKLCNKWETTGKCPFGEKCHFAHG 220
                    8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-134984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-85082IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0515178IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-65177IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-55276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7111138IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4111138IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6114136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8114137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-16190226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10191225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582194222IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-7194221IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10195220IPR000571Zinc finger, CCCH-type
PfamPF092963.6E-9342456IPR015375NADH pyrophosphatase-like, N-terminal
SuperFamilySSF558111.19E-41442622IPR015797NUDIX hydrolase domain-like
Gene3DG3DSA:3.90.79.101.2E-47456610IPR015797NUDIX hydrolase domain-like
PfamPF092974.8E-6461491IPR015376Zinc ribbon, NADH pyrophosphatase
PROSITE profilePS5146217.425492622IPR000086NUDIX hydrolase domain
CDDcd034292.14E-62496669No hitNo description
PfamPF002932.2E-17497610IPR000086NUDIX hydrolase domain
PRINTSPR005021.7E-5523537IPR020476NUDIX hydrolase
PROSITE patternPS008930528549IPR020084NUDIX hydrolase, conserved site
PRINTSPR005021.7E-5537552IPR020476NUDIX hydrolase
Gene3DG3DSA:3.90.79.101.2E-47650670IPR015797NUDIX hydrolase domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDDQHSQFEQ QPFKRARNSE ESQSNPMPYP PMNIRVQQPN APVNKGASNI FYKTRLCVNF  60
KSGMCRNGEN CNYAHGIEDI RHPPPNWQEL VSVREEDRPL SGNWDDDQKI IHRMKLCKKF  120
YNGEECPYGD RCNFLHEDPA KFRDDSGRFR ENTAISIGTT GPPVPHGGGS NHPEENRLVN  180
VGMDALRGNV KPVYWKTKLC NKWETTGKCP FGEKCHFAHG LTELQAPGGR TXEAEFLSPL  240
PFPTPQVVSA VNSSATAIAX LPALNEEEGQ KKKGMLKWKG SKKINRIYAD WLDDVPLKIH  300
SPHPVQKSSL FRLHRRRRHD VHKPPVPRLR RQSPANQDPK SQRPFFTIPS XRDPQDPTFG  360
RXPIALFPQL QGFLTNCGVQ LSGESLVYLG SRPEDDLVYW AIDVSADSES SLVAELGSKR  420
LCFVELRTLM VATDWGDARA MRELAIAGHA RALLEWHSIS QFCGHCGEKT VPKEXGRRKQ  480
CSSELCRKRV YPRVDPVVIM LVIDRENNRA LLSXQSRFVP RMWSCLAGFI EPGESLEEAV  540
RRETWEETGI EVGEVVYHSS QPWPVGPNSM PCQLMVGFFA YAKSLEINVD KEELEDAQWH  600
SREDVKRALA FAEYKKAQTT AASKVEQMCK GVEKGQNFSA DFNVESGELA PMFIPGPFAI  660
AHHLISSWVY QDATDGVTAR LKQTSGSTSN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6o3p_A6e-47442669142335Peroxisomal NADH pyrophosphatase NUDT12
6o3p_B6e-47442669142335Peroxisomal NADH pyrophosphatase NUDT12
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.67651e-145bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385762.20.0nudix hydrolase 19, chloroplastic-like
TrEMBLA0A498KEG20.0A0A498KEG2_MALDO; Uncharacterized protein
STRINGXP_008385762.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF454422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-77C3H family protein