PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309874
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 1259aa    MW: 141446 Da    PI: 8.1839
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309874genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-1098910631593
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3   15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                     +l+lp  f+++ +gkk++  t  l  +    W vk+   +++++   +++GW+eF+k ngLke D  vF+++g++ f++v
  MDP0000309874  989 QLRLPPAFCRSLSGKKPK--T-ALIKSCLGYWGVKV--GRSGDGnLAFEEGWEEFAKCNGLKEADNAVFEHKGDMAFNMV 1063
                     699*********989655..4.455566779*****..665555699**************************9999775 PP
2B339.78.5e-13116612421689
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-...TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvlt...kGWkeFvkangLkegDfvvFkldgrse 89  
                      + p +fa+e+g+ + +  +l+l+d++gr W + l  ++++ +   + l+   +GW +F  +ngLkegD+++Fkl++ ++
  MDP0000309874 1166 QTTPARFARENGLHSIS--KLILNDPRGRLWPLSLGRWGSRVKaadHRLAikaRGWCKFYASNGLKEGDVCLFKLKR-MS 1242
                     46699******988544..8***************554444333445555666*********************976.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.640.102.3E-29181392IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
SuperFamilySSF533836.22E-12184393IPR015424Pyridoxal phosphate-dependent transferase
SMARTSM010190.0139801068IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-119861075IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-119881069IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-89891063IPR003340B3 DNA binding domain
CDDcd100176.28E-89891057No hitNo description
PROSITE profilePS5086310.15110171068IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68811511258IPR003340B3 DNA binding domain
SMARTSM010190.004311541246IPR003340B3 DNA binding domain
PfamPF023625.7E-1011661241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1211671242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-1111691240No hitNo description
SuperFamilySSF1019361.24E-1011691243IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 1259 aa     Download sequence    Send to blast
MHLSVWKPIS HCAALLMEKK TRRRRDNGSG LAVDAKRKPS VLRQLQENRL REALEEASED  60
GLLSKSQDID SDQTPNQDGS FGRSRSLARL HAQKEFLRAT ALXADRTFST EDSIPHLREA  120
FNKFLTMYPK FQSTEKIDHV RAEEYSHLSE SLAKVCLDYC GFGLFSNLQT QLYWETCSFT  180
LSEITANLSN HALYGGAETG CVEHDIKTRI MDYLNIPENE YGLVFTVSRG SAFKLLAESY  240
PFGTNKKLLT MFDHESQSVN WMAQKAKEKG AKXYSSWFKW PTLKLCSREL KKQIANKKRR  300
KKDSATGLFV FPVQSRVTGA KYSYQWMALA QQNNWHVLLD AGSLGPKDMD SLGLSLFRPD  360
FIITSFYRVF GSDPTGFGCL LIKKSVMASL QSQGGRTGTG IVRILPVFPQ CLSDSVDGLD  420
GLGGIENDAV NCNEELVPET NGESHMPAFS GVFTSNQVRD CFETEMDQDS DRDGASTIFE  480
EAESISIGEV MKSPIFSEDE SSDNSYWIDL GQSPFGSDLS DQHTRQKTGS PLPPTWFSGR  540
KINKIFSPKV TPKPPKSPIY DDDKRANLRV HEDPGLSFDA AVLSVSHEPD RVKGIPEEEM  600
FAETDAASRN GREIPEEPEI REDLMANNSK LLXXEDGFRX NXQTXGLKHN NFENSSTSEI  660
CQESKDSAIR RETEGDFRLL GRRETKRFSG GRFFGLEEGD REPSMGHRLS FTIEDDHRGK  720
SSLILEPGET SMTILGDDEF MSEGEYGDEQ EWERREPEIV CRYLDHVNML GLNKTTLRLR  780
YLINWLVTSL LQLRLPGSHE GAEVXLVQIY GPKIKYERGA AVAFNVRRSX GRXXVHPEVV  840
QRLAEKNGIS LGVGILSHVR IVDGPKQQHC GALDQADTSL CKPMVNGRQG GKNMFFXVEV  900
VTASLGFLTN FEDVYKMWAF VAKFLDSSFA EVERDELPSL XEESETTNSK YKLQPMASMD  960
SQPLYCDPEL RWRAAIGPSM LYKHKHCIQL RLPPAFCRSL SGKKPKTALI KSCLGYWGVK  1020
VGRSGDGNLA FEEGWEEFAK CNGLKEADNA VFEHKGDMAF NMVAYDSGGC EKEYPPDSGV  1080
AANRMATSSK ARNNKHHRGS KGKGLLKTTK WLTSRKQFKI KMAKSHGCVS KGYVHAFNRA  1140
LGGVVKCAGV SFSFRILSQS GERLWQTTPA RFARENGLHS ISKLILNDPR GRLWPLSLGR  1200
WGSRVKAADH RLAIKARGWC KFYASNGLKE GDVCLFKLKR MSRSISTAFM DVEITRRRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KKRRK
2296301KKRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137640.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365641.10.0PREDICTED: uncharacterized protein LOC103955467
TrEMBLA0A498J6W40.0A0A498J6W4_MALDO; Uncharacterized protein
STRINGXP_008377375.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-11B3 family protein