PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000308379
Common NameAP2D13
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 353aa    MW: 39535.8 Da    PI: 4.4788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000308379genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20115165155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++y+GVr+++ +g+W+AeIrdp     r +r +lg+f+taeeAa  +++a+ kl+g
  MDP0000308379 115 KKYRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTFDTAEEAAMVYDNAAIKLRG 165
                    59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-34115172No hitNo description
SMARTSM003801.9E-39116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-31116173IPR001471AP2/ERF domain
PfamPF008471.8E-13116165IPR001471AP2/ERF domain
PROSITE profilePS5103224.131116173IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22116173IPR016177DNA-binding domain
PRINTSPR003676.0E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.0E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MESSILCPIK YSEHRSTTKK LMKPRKKATS ESASTVTPRI VRISVTDPDA TDSSSDEEEE  60
FFGRQRVKHY VNEINIETDF RNSLVINNGR KRPAAEVPVN RRPMKNAVSP PNGGKKYRGV  120
RQRPWGKWAA EIRDPARRQR LWLGTFDTAE EAAMVYDNAA IKLRGPDALT NFVAPPPKEE  180
EKPEPPVIES IEVETNGTTS ASGYDSGSES HNLASPTSVL HFRSQPSIED AGKPQKIQVF  240
DRVDEDEDET ETGTNILSDD LSYFGNYLPL DLPYFDDAFS FPAPESPLFD SPLFFDDVPA  300
AAASLPDCFM KDDFSELYRD TYDTSLSHTA SPMFQGDDYF QDILFGSDPL VVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22114172362ATERF1
3gcc_A3e-22114172362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324370.0GU732437.1 Malus x domestica AP2 domain class transcription factor (AP2D13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315895.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A498JJI20.0A0A498JJI2_MALDO; Uncharacterized protein
STRINGXP_008376686.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-51cytokinin response factor 4
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]