PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000305771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1598aa MW: 178558 Da PI: 8.6854 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 383 | 404 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H MDP0000305771 383 CPKCSKGFRDPVALVEHVERdH 404 *****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 1.7E-9 | 208 | 265 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.28E-7 | 210 | 261 | No hit | No description |
PROSITE profile | PS51039 | 8.022 | 215 | 263 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 5.3E-7 | 218 | 258 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.042 | 342 | 365 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.12 | 342 | 370 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 344 | 365 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.1 | 381 | 404 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 381 | 409 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 383 | 404 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF03604 | 4.1E-10 | 1387 | 1415 | IPR006591 | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 |
SMART | SM00659 | 1.2E-4 | 1387 | 1425 | IPR006591 | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 |
SuperFamily | SSF63393 | 1.96E-7 | 1387 | 1418 | IPR029040 | RNA polymerase subunit RPABC4/transcription elongation factor Spt4 |
Gene3D | G3DSA:2.20.28.30 | 2.3E-11 | 1387 | 1418 | IPR006591 | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 |
ProDom | PD012151 | 3.0E-4 | 1388 | 1418 | No hit | No description |
Gene3D | G3DSA:2.20.28.30 | 1.7E-18 | 1488 | 1527 | IPR006591 | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 |
SuperFamily | SSF63393 | 7.32E-13 | 1489 | 1526 | IPR029040 | RNA polymerase subunit RPABC4/transcription elongation factor Spt4 |
SMART | SM00659 | 8.7E-16 | 1489 | 1536 | IPR006591 | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 |
Pfam | PF03604 | 1.7E-15 | 1491 | 1522 | IPR006591 | RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 |
ProDom | PD012151 | 0.002 | 1495 | 1517 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1598 aa Download sequence Send to blast |
MIEVKKERPL GVLPRIPDAE VGYTFKKLRP EVFKENNTFT PPYNCPKSVI LRWLQRLCLF 60 FSLGEKRKLG RPWPWDSRVF GVSLCIRGSQ NPIQASDNPI PIPIPASPNK SRDQIIRSIL 120 YISTHFVDWR RASTAQRAKF GWELRNSQIW VFCLEHRSYI KHNCPNGDRN NVTVVICPLC 180 AKGVHLIPDE DPNITWERHV NTDCDPSNYE KATKKKKCPI PGCKEILTFS NTIKCRDCMV 240 DXCLKHRFGP DHKCPGPKKP EAGFPFMGYL SRSRKEVSKP SHAPAASSPK WGSFLTAASS 300 FRASAEASVA KLSSELSQKW QIAKDGTGPS SSSSGSRNGQ VEVCPQCGAK FSSVTTLVDH 360 VEKVHEKSGN RAAGVKKVTI DACPKCSKGF RDPVALVEHV ERDHGGKERP ISEVPIFPSC 420 QIVCILYSKM SAVSGVISRQ VLPACGSLCF FCPALRARSR QPVKRYKKLI ADIFPRNQEE 480 GPNDRKIGKL CEYVAKNPLR IPKTDGTYTF NLEGFIPKLC QIAQEPGEDE RASNLRSAAL 540 QALSSMVWFM GEKSHISVKF DSIVAVVLEN YGGSNKTTEN LEGSKRWVQE VQSNEGHGSS 600 SPDVTIRLTS WSTLVDDKGE LNVTVEDAKN PCFWSRVCLH NMAKLAKEAT TIRRVLESLF 660 RYFDTGNLWS PKYGLAIPVL KDIQVLMDDC GQSTHILLSI LIKHLDHKNV LKQPNMQLEI 720 AEVTTSLSQL AKVEPSVAII GAVSDAMRHL RKSIHCSLDD ANLGTDVTKW NRSFREVVDK 780 CLVQLCYKVG EPGPILDAMA VMLENISTIT VIARNTISAV YRTAQIVASL PNLSYQNKAS 840 SITYVLAFPE ALFHQLLPAM VHPDHETRVG AHRIFSVVLV PSSVCPTRSS PNTESKKALN 900 FPRTLSRTVS VFSSSAALFE KLRREKISSR ESICEEDNEN TDNEGEQRDT NNGILSRLRS 960 SYSRTYSIKS SPAPSSTKEN SVNSSTKEPE ANSLRLSSHQ ITLLLLSIWA QSISPGNMPE 1020 NYEAIAHTLS LVVLFSRAKN SRIEVLVRSF QLAFSLRNIS LNEGGLLPPS RRRSLFTLAT 1080 SMILFLSKAY NIVSLVCRAK AVLVDKIVDP FLHLVEDRKL QAVKTGPNHP RHLYGSEEDD 1140 NMALKSLSEI NITEEQTKEF FASEVVKSLE RLLDAEMSTI REELLSEFLP DDVCPLGAQL 1200 CMDAPQKLYQ VDSRDTKSMK EDAPIFSLDD DYFQGSFDSQ KNNLDFSAES HNLLSVSQLI 1260 ESVLETAHQV GRVSVSNAPD VPYKEMAGQC EALLLGKQQK MSNLMSSQPK QEYLMNQSLQ 1320 NHSDDAKWMT SDSHRSGNPF VDDTANSYKP SPSTGHAPMM CVTEYQHHPH SFRLPASSPY 1380 DNFLKAAECG LEVQLKPNDS MQCRDCGYHI LYKKRARRNA NSRCEAPYTM LHPRRLGSCE 1440 VGDGKLKRRT FGILCELLRT RGRLRMYGSV SIEDPIRAAP MDPPPPEAVY YICGDCGMEV 1500 QLKSNDVIQC RECGYRILYK KRTRRSKSSL XLYDXIQRLI MTNGCFCSCS VRGALKNPGG 1560 ALSMATDDVN DRWRLLNSAM FYTTCTVLTR NSPIGQGV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.3668 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028948441.1 | 0.0 | uncharacterized protein LOC114821012 | ||||
TrEMBL | A0A498I5E3 | 0.0 | A0A498I5E3_MALDO; Uncharacterized protein | ||||
STRING | XP_009355500.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 2e-96 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000305771 |