PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303627
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 257aa    MW: 28940.8 Da    PI: 6.9259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303627genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000313658123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C++ F++   L  H++ H
  MDP0000303627 36 YECVFCKRGFTTAQALGGHMNIH 58
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.94E-63463No hitNo description
Gene3DG3DSA:3.30.160.602.7E-43462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4273663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MESNHPDHQD SKTSSTDEEA EXRRDVNDDM GTGRSYECVF CKRGFTTAQA LGGHMNIHRR  60
ERAKTRPSSD PTNLASSTSK AVEDQSHPRA AVYHAIQSYP PXYFIAPPDD HMNYRTYVPA  120
PNTSGVLRPP HANHISDEDL CARNYFPRHR NLLRDDHQDW RSGSSSSLRM GRPSDDYKER  180
VFNGGSEEAD DELDLELRLG HGRHGTKCSE RFXDDYGAAL TSSYFNHKST TTRSTHVVLK  240
KAVQPAAQGI SSQNAFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184740.0HQ418474.1 Malus x domestica transcriptional regulator superman (SUP9b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959494.11e-147transcriptional regulator SUPERMAN-like
TrEMBLA0A498JRA71e-146A0A498JRA7_MALDO; Uncharacterized protein
STRINGXP_009354919.11e-144(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-13C2H2 family protein