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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MDP0000303328 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 305aa MW: 30780.9 Da PI: 8.7808 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 11.9 | 0.0007 | 212 | 234 | 2 | 23 |
EETTTT.EEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCg.ksFsrksnLkrHirtH 23
+Cp C+ Fs++ L H+r+H
MDP0000303328 212 TCPVCNrSDFSSWKALFGHQRSH 234
6*****889*************9 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 305 aa Download sequence Send to blast |
MTNSKDTTTT TNQGSSAEGQ QPRNENVSSN VTGAAPTTPP STHARTPTPT PPPPHSTGQV 60 NAGGGDGGFL RSSGTPPVRT HLTTGQFNVG GFATGGSSVT PPGPNKGSPG HGSPSPSRGT 120 STPRRGSPSG GRRTPSRGSK SPPSGRGSPS SLGRGSSPAG GNISQIGGSS FTPVRVEISL 180 GGRLAAAGSM AVGGQLGKRK AEVKAPEGMT PTCPVCNRSD FSSWKALFGH QRSHPERPYR 240 GAFPPPGQQQ GEASNAANVR EARDVEEDNE GRGGIDLNMP PPDDDDDDVX DDNRDSGDSG 300 GGAEA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008337944.2 | 0.0 | uncharacterized protein LOC103401020 | ||||
| TrEMBL | A0A498HVV4 | 0.0 | A0A498HVV4_MALDO; Uncharacterized protein | ||||
| STRING | XP_008337944.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF10202 | 21 | 28 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G35280.1 | 5e-09 | C2H2-like zinc finger protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000303328 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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