PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000302966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 651aa MW: 74300.3 Da PI: 8.528 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 96.6 | 2.6e-30 | 14 | 112 | 2 | 102 |
HHHHHHHHHCTG.......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeilede.......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k++++le++ ++++sw+ +g+ f+v+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk++ + weFkh++F+kg MDP0000302966 14 FLSKTFDLLEEQdvggddgGKRNTVSWNVEGTGFIVWSPADFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKL---------WEFKHEKFQKGC 100 9*********55555555599*************************************************99876.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 +++l +i rkk MDP0000302966 101 RHMLVEITRKKC 112 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-32 | 4 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-38 | 10 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.77E-23 | 11 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-26 | 14 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-9 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-9 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE profile | PS51375 | 5.623 | 215 | 249 | IPR002885 | Pentatricopeptide repeat |
SuperFamily | SSF48452 | 7.59E-5 | 268 | 324 | IPR011990 | Tetratricopeptide-like helical domain |
Gene3D | G3DSA:1.25.40.10 | 9.5E-13 | 269 | 439 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 9.975 | 284 | 318 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.1E-4 | 287 | 317 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.0018 | 287 | 316 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 9.547 | 319 | 353 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.7E-4 | 322 | 354 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 6.9E-8 | 322 | 365 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.52 | 354 | 384 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.6E-4 | 356 | 390 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.412 | 390 | 420 | IPR002885 | Pentatricopeptide repeat |
SuperFamily | SSF48452 | 7.59E-5 | 397 | 462 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 5.415 | 425 | 455 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.305 | 460 | 494 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.96 | 495 | 529 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.096 | 501 | 526 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 9.5E-13 | 510 | 571 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF48452 | 7.59E-5 | 512 | 562 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 6.171 | 530 | 564 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.437 | 571 | 601 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 9.5E-13 | 603 | 622 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 5.448 | 605 | 642 | IPR002885 | Pentatricopeptide repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MAETSSRTRS AAPFLSKTFD LLEEQDVGGD DGGKRNTVSW NVEGTGFIVW SPADFSELLL 60 PKYFKHNNFS SFIRQLNTYG FKKTSPKLWE FKHEKFQKGC RHMLVEITRK KCEPSAFPAY 120 LKASEESEST STALAAAEEN NCLLLMEENK NLRKQQLELQ LFARTLIRNA MASRSYYTSR 180 TKKPTLYNKI SPLGNPSLNV VPELDDWVYN GNKVRVAELQ RIIHDLRKRK RFSQALQISE 240 WMNQKGVCIF SPVEHAVQLD LIGKVRGFDS AEEYFNNLRD EDKNIKTYGA LLNCYVRQRQ 300 VDKSLAHLRK MKGMGFVSSP LTYNDIMCLY TNVGQHEKVP GVLAEMKENN VPPDNFSYRI 360 CINSYGVRSD LEGMEKVFKE MESQPRIVMD WNTYAVVANF YVKEGQTDKA MNALXKSEER 420 LDNKDGLGYN HLISLYASMG SKGEVLRLWG VEKSACKRCI NRDYMGMLXS LVRLXELDEA 480 EKVMEEWELS GNCYDFRVPQ TVITGYTVKG LYERAEALLE DLMEKGKATT ARSWETVAAG 540 YVNKGEMKKA FKCLKVALRL SSEKRWKPNL GVVTLTTLLS WLGDEGSAED AEAFVGALRK 600 VIPVNKHMYH ALLKAYVREG KEVNSVLDRM KADKIDGDGE ETEKILAMRE N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5i9f_A | 4e-24 | 211 | 618 | 11 | 413 | pentatricopeptide repeat protein dPPR-U10 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ986525 | 8e-33 | FJ986525.1 Corylus avellana clone B728 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371361.2 | 0.0 | pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like isoform X1 | ||||
Swissprot | Q84JR3 | 0.0 | PP334_ARATH; Pentatricopeptide repeat-containing protein At4g21705, mitochondrial | ||||
TrEMBL | A0A498JYW4 | 0.0 | A0A498JYW4_MALDO; Uncharacterized protein | ||||
STRING | XP_008371361.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3535 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 3e-33 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | MDP0000302966 |
Publications ? help Back to Top | |||
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