PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000300311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 244aa MW: 27161.3 Da PI: 8.6938 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 69.5 | 6.3e-22 | 37 | 157 | 127 | 253 |
GRAS 127 aLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 L++ La+R+ l iT+vg + k+++ etg+rLa++A++l++pf+f+++++ ++ed++ + ++++ +Ea++V l ++ +++ +le MDP0000300311 37 VLMEVLAEREeCHIELLTITAVGV---TGKQKIXETGRRLASVAKALNLPFQFKAVIVADMEDVKGQLFDIEXDEAVVVYAPXILRTMISRPSCLE 129 69********4445699*******...689***********************************************************8888888 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesF 253 + + +++++l P v+vv+ ea+hns+ + MDP0000300311 130 N----LXRVMRTLXPCVMVVIXVEANHNSPGL 157 8....999********************9876 PP | |||||||
2 | GRAS | 46.8 | 5.1e-15 | 157 | 242 | 289 | 374 |
GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+ + i n+v +eg+er+ r + e Wr+ + ++ + +++ls+ a a+l+ +k++s + + + ++l+ gWk+ p+ s+SaW+ MDP0000300311 157 LFXEGIXNIVVAEGSERVXRSXKXEVWRAFFARFRMVEINLSNAALFXASLVSKKYGSPACTXDRNGNCLTVGWKGTPIHSLSAWK 242 68899******************************************************9*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.794 | 1 | 244 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-19 | 37 | 157 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVRCGLQHYK VDRFAPRKHL NGHKTALGSD QGCPDSVLME VLAEREECHI ELLTITAVGV 60 TGKQKIXETG RRLASVAKAL NLPFQFKAVI VADMEDVKGQ LFDIEXDEAV VVYAPXILRT 120 MISRPSCLEN LXRVMRTLXP CVMVVIXVEA NHNSPGLFXE GIXNIVVAEG SERVXRSXKX 180 EVWRAFFARF RMVEINLSNA ALFXASLVSK KYGSPACTXD RNGNCLTVGW KGTPIHSLSA 240 WKFS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378753.1 | 1e-113 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A314ZT21 | 1e-105 | A0A314ZT21_PRUYE; DELLA protein RGL1-like | ||||
STRING | XP_009378753.1 | 1e-113 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-20 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000300311 |