PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000300013
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 313aa    MW: 35353.3 Da    PI: 8.5321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000300013genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05155174120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    + C++C+k+F+r  n++ H+
  MDP0000300013 155 FACSICSKTFNRYNNMQMHM 174
                    78*****************9 PP
2zf-C2H211.50.00093239261123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +C k+F  k + ++H +++
  MDP0000300013 239 FMCRKCAKTFAVKGDWRTHEKNC 261
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-5146178No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SMARTSM00355190202234IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4225259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.74E-5225259No hitNo description
SMARTSM0035578239259IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGLLNHHVED QNLCFQAPPF IEWLKPPSSF SSSSSSSSSS FCVSEDSTMQ CLPLLSRFTD  60
TKPVKIEDAG VQKEGYGVKE EQMEKVTVAL HIGPPNSSST TTGVYSDTYD ENKKVLNLKE  120
EQVVMKKSFL GCSFNAESRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM QMHMWGHGSE  180
YRKGPDSLKG TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFM  240
CRKCAKTFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSLEGFH  300
EDEKECVTGS EEE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391103.20.0LOW QUALITY PROTEIN: zinc finger protein WIP3-like
SwissprotQ9SGD11e-124ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A498IPP40.0A0A498IPP4_MALDO; Uncharacterized protein
STRINGXP_008391103.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-123WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]