PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000298218
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 361aa    MW: 41935.1 Da    PI: 9.6769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000298218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.1e-1215106199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv    d+++   l +p kf+ ++g++   s  + l+ + g +We++l  r++ g+++++kGW eF k   L+    +vF ++g+s+f  +v +
  MDP0000298218  15 FFKVI-LDDTSRDTKLKVPMKFVMKYGEE--LSSPVYLRLPCGSEWEIEL--RRCNGEVWFEKGWPEFSKFYSLDYAFWLVFGYEGNSRF--HVFI 103
                    55655.3456666779**********855..6778***************..**********************************9999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  MDP0000298218 104 FDR 106
                    987 PP
2B352.87.1e-172112801687
                    EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     vlp  fa++h ++++++    +l+ ++g +W vkl+   k++++ +++GW eFv++n+Lk+gD++vF l++ 
  MDP0000298218 211 QVLPAGFAKRHlMHQPHG--NAILRLPDGGTWCVKLKLY-KQQKVRFKRGWLEFVRDNNLKTGDVCVFILIKG 280
                    39*********8777666..599999**********543.335699**********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-218108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-218108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-1313105No hitNo description
PROSITE profilePS5086311.77314107IPR003340B3 DNA binding domain
SMARTSM010194.8E-815107IPR003340B3 DNA binding domain
PfamPF023622.1E-815106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-21184284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20185284IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-20190291No hitNo description
PROSITE profilePS5086312.435196293IPR003340B3 DNA binding domain
SMARTSM010195.3E-15201293IPR003340B3 DNA binding domain
PfamPF023622.8E-14211283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASLRPTFSS TIPHFFKVIL DDTSRDTKLK VPMKFVMKYG EELSSPVYLR LPCGSEWEIE  60
LRRCNGEVWF EKGWPEFSKF YSLDYAFWLV FGYEGNSRFH VFIFDRSCTE VDYPIKLPDK  120
EKTDYEDDES VEILDDFXTS RRRKGERYSS LPCPLPPKKK RKSYSRMHPL TEKDKAIALQ  180
RAIAFKSEKP HFKVAMQPSY IFGNLVNTLA QVLPAGFAKR HLMHQPHGNA ILRLPDGGTW  240
CVKLKLYKQQ KVRFKRGWLE FVRDNNLKTG DVCVFILIKG IELAFEVVFY RGEHDFSTMK  300
EVGGLSSSQI FQKRTPDVLG REHSLTKSEK ALALQRANAF KSEYPSFPVA IQPSYIHSSY  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1416529122141B3 domain-containing transcription factor VRN1
4i1k_B3e-1416529122141B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141161RRKGERYSSLPCPLPPKKKRK
2156162PKKKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505416.10.0PREDICTED: uncharacterized protein LOC108867956
TrEMBLA0A498KHT00.0A0A498KHT0_MALDO; Uncharacterized protein
STRINGXP_008339485.11e-154(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-25B3 family protein