PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000296077
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 586aa    MW: 65593.7 Da    PI: 10.384
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000296077genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA82.95.1e-26389439152
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpR 52 
                    +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+R
  MDP0000296077 389 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRAR 439
                    69****************************.********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.3E-26387446IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.966388453IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-22390440IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.0E-18391413IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860393413IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.0E-18422445IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MREQIRAEDE QLQAYAGHMK DLPTSRKVYL CDACNPSSRK VILRNVCCVA QNYFARSRLR  60
RGKYFTRRRI KCVAQRQQRQ SPCITFTCFL GSLVHQQLRH RTPSWFPTYS SRENVNFTGH  120
VANAAGVAPS LWSPPRRXAY PGPCPSSARR VGLSEIVRFR GSKSRVLFGI GFSLGKVCEN  180
WGFDLILSVH VSIACNCDIG VFRVCGIQNC FWGRRVLIVP KNEAENRPHA HPIPPSSVYS  240
EPWWCSAGHN PISPTGTGRN ASNSSLLECP NGGSESNDGQ SLSNDETNED DDDATKDSHI  300
TSPRSAGNYG QDHRNVKHAG SGVPTVRDDC LAQPPQLELV GHSIACASNP YQDPYYGGMM  360
AAYGHQPLGY PPFLGMPHAR MPLPLEMAQE PVYVNAKQYQ GILRRRQARA KAELERKLIK  420
VRKPYLHESR HQHAMRRARV HRAQNPFXRI LLKHGIPPIV NGKQEVPKCT MRIRLIIIQM  480
VVAATSPMVV CRLQCILHAR AREGKKEIGK ASNEATYLRT RPHRGVLPFS EPLEADAVDS  540
TRKGGNSFLA VFLRVRHRCR GGVMMKGHLA PAKPFRLLIA SFPIXA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-14389439252NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.148070.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.35e-65nuclear factor Y, subunit A1