PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000294210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 394aa MW: 43454.2 Da PI: 6.5531 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101 | 1.1e-31 | 18 | 116 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++r++C++dCv+apyf +++ ++f+++hk+FG+sn++kllk+l++++ r +a+++ ++eA ++ +dPv+G +g+++kl+++ e l++ l+ MDP0000294210 18 ACAACRHQRKRCEDDCVMAPYFTNKD-EDFKAAHKIFGVSNMTKLLKQLDDQNhRGTAVQTFMWEAYIWKQDPVNGPLGMYRKLERENELLRNALN 112 7********************98776.99********************77766*************************************99999 PP DUF260 96 llke 99 + ++ MDP0000294210 113 EEQK 116 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.61 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-30 | 18 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MSMGSSSSAG ELIACRHACA ACRHQRKRCE DDCVMAPYFT NKDEDFKAAH KIFGVSNMTK 60 LLKQLDDQNH RGTAVQTFMW EAYIWKQDPV NGPLGMYRKL ERENELLRNA LNEEQKALAL 120 AFAASTMEEE PLALDQENHS NSGNINDDVE GVIPIYGNAR NYGYANQSLA IDGSTNGTYT 180 KLLQGQEATE MSQEQQVLGQ GRGFHHGAAL AKQQARDQQG VVGLDSSAGQ FGMVGLMSTL 240 QSQRPMQFEG RPDIGPYMYG QGRGQVVFDP SVGQGQQRAL GSAGAAQIGP HFGDFSLLGH 300 TRSAITQSPY SPYHHQQPHH PVHAQRLVMS QGQNHPNFQQ YSSLNNCHNY DNVQVPHSRW 360 LTSFATSTVF QTSEDPSGSC STTLLSIETV KLWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-14 | 19 | 134 | 12 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-14 | 19 | 134 | 12 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352961.1 | 1e-180 | PREDICTED: LOB domain-containing protein 30-like | ||||
TrEMBL | A0A498JVM6 | 0.0 | A0A498JVM6_MALDO; Uncharacterized protein | ||||
STRING | XP_008371704.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14786 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 3e-13 | ASYMMETRIC LEAVES 2-like 9 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000294210 |