PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G16530.1 | ||||||||
Common Name | ASL9, F3O9.33, LBD3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 165aa MW: 18637.3 Da PI: 8.5875 | ||||||||
Description | ASYMMETRIC LEAVES 2-like 9 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.3 | 1.2e-42 | 14 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+lrrkC+kd Cv+apyfpa++p kfa+vhk+FGasnv k+l++l+e++r+da++s+vyeA+ar++dPvyG+vg+i++l++qle+l+++la + AT1G16530.1 14 PCAGCKLLRRKCVKDsCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFA 111 7***********9988********************************************************************************99 PP DUF260 98 kee 100 ++e AT1G16530.1 112 QAE 114 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.707 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-41 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML 60 QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ LETLQTQLAF AQAELIHIRT 120 LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-42 | 13 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-42 | 13 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49305 | 0.0 | leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186478551 | 0.0 | ||||
Genevisible | 262704_at | 0.0 | ||||
Expression Atlas | AT1G16530 | - | ||||
AtGenExpress | AT1G16530 | - | ||||
ATTED-II | AT1G16530 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. At the bases of lateral organs formed from vegetative, inflorescence, and floral meristems. {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:17485849}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G16530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G16530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473842 | 0.0 | AB473842.1 Arabidopsis thaliana ASL9 mRNA for ASYMMETRIC LEAVES2-like 9 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173102.1 | 1e-124 | ASYMMETRIC LEAVES 2-like 9 | ||||
Swissprot | Q9SA51 | 1e-125 | LBD3_ARATH; LOB domain-containing protein 3 | ||||
TrEMBL | A0A178W2T7 | 1e-122 | A0A178W2T7_ARATH; LBD3 | ||||
STRING | AT1G16530.1 | 1e-123 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 | Representative plant | OGRP60 | 16 | 318 |
Link Out ? help Back to Top | |
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Phytozome | AT1G16530.1 |
Entrez Gene | 838223 |
iHOP | AT1G16530 |
wikigenes | AT1G16530 |