PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291591
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 301aa    MW: 34148.4 Da    PI: 10.0713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.7e-2015104197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk l++   ++++ l+lp  f+e+++g +++  + tl+ +sg+sW+v l   + +g+++++kGW++Fv+++ L+ g f+vFk+dg+++f   vk+
  MDP0000291591  15 FFKPLVHD-DFSRH-LCLPPLFMENFNGRPPC--KCTLRGPSGESWTVGL-EGREDGKFFFRKGWQNFVEDHLLEIGNFLVFKYDGDTKF--DVKI 103
                    88999654.45555.9*******999999988..69**************.3445555***************************99888..7777 PP

                    E CS
             B3  97 f 97 
                    +
  MDP0000291591 104 Y 104
                    6 PP
2B344.23.4e-141952791699
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++pkk a + g++++e   ++l+d++g++W+vkl++   + +++r ++t+G  +  +an++  gD+ vF+l+++++ e+++++fr+
  MDP0000291591 195 QTVPKKLAVAKGLIEKE--RVRLTDPNGKTWKVKLRVeeiKSCGSRLLMTEGLLKCWHANNISPGDTAVFELVNEKRSEMKIHFFRA 279
                    578*****999999766..6***************99986666667***************************999999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2410109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-2113105No hitNo description
PROSITE profilePS5086313.3113107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2313109IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-1915107IPR003340B3 DNA binding domain
PfamPF023625.0E-1715104IPR003340B3 DNA binding domain
SMARTSM010190.002185280IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-10194279IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-11195279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-11195280IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-8196278No hitNo description
PROSITE profilePS508639.53197280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MARNSTNPSW RVRSFFKPLV HDDFSRHLCL PPLFMENFNG RPPCKCTLRG PSGESWTVGL  60
EGREDGKFFF RKGWQNFVED HLLEIGNFLV FKYDGDTKFD VKIYNPTGCE KEEAVAAKNT  120
TGNLASIRNR KKSMLYKPAD VKETSDGHIA FRSKYKTCFK ATVPKIPYRM ILGKARHLSA  180
IPNRLVTDDV PSILQTVPKK LAVAKGLIEK ERVRLTDPNG KTWKVKLRVE EIKSCGSRLL  240
MTEGLLKCWH ANNISPGDTA VFELVNEKRS EMKIHFFRAE AGGKRPTVVL ELDASDSVVE  300
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380674.10.0B3 domain-containing protein Os12g0591400-like
RefseqXP_008380675.10.0B3 domain-containing protein Os12g0591400-like
TrEMBLA0A498K4350.0A0A498K435_MALDO; Uncharacterized protein
STRINGXP_008380674.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-17B3 family protein