PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000291317

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 910aa MW: 101819 Da PI: 9.2722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000291317	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H MDP0000291317 76 KCDKCPREFCSSINYRRHIRVH 97 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.034	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MSIAKPTTSN SLFAMKSKEE NDSLDTIIKQ AAKEPSISFS RAGDSPVPWI QLLHALDQQE 60 LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK 120 CMFSPFHDLV FVQLSPEEAT EAISFKNVTL EEVPGSSIIK ALTTLIRKPG FSPFPHIYLK 180 AGSALLDIFQ ARPSRFPISS QELFSILDDA SEKTFLSGTA ISMQRYIFDG EAGKIGLESK 240 NLVACTSFLV EQKLLKAWHA DKDTEALRLQ KLLVEEEEAA QRRQTELLER KRQKKLRQKE 300 LKEKDQRHGE KVDVTENIDE TLEAVPLVET SSPSATFDSD TASSDMLDHA CLSLESFQLS 360 NMDVSADPES QTGVNFGHVD SVSGPNVERP VVQGNGSRRA VAQWQLSPKS QRGVPNGFHG 420 GHSSQTLKHS STKHHGNHRD ARAASSGNRV WSRKPKPEYD GRSLKAGEQK EASEPDQIKN 480 REVLIGSIPV NLGNCCQESN NQAGVHDDCL SEKGQMPKDN SQDKTNKPDL VQSGTNRSTV 540 KLWRPVSRNG TKGPMPIQNG SKESDINVVA EKGNSQNPYS ENCEGSCVVD GHNVGNGNDS 600 THPDETGRLG FSSHAAKDFL AQRWKDAIAA DHVELVLFQD SEPPRCPENQ NDREVAATHP 660 SRFKRSILGN AENRLVNGEA FDLPTAGAAK VRRRTKHDKG VKIKYIPKPS AVAYRPFLFS 720 LSCVFRTVSM ASWMRPTDQT SRFLDRHFVY EGAFVMSFRV TAFEVEIEKE KTADPTDLNH 780 PEEREHVYKQ QNDDVPASSL KYLNPKRGQT METASRANRI SFWQLNALIV MVVLAARGLV 840 SPLDLAFPAS IRLPFKRPAG LQRRGHNGQN RPGFRRRVGP RPADSVYISR VFGRRPRRHQ 900 SGCPARVFTH

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MSIAKPTTSN SLFAMKSKEE NDSLDTIIKQ AAKEPSISFS RAGDSPVPWI QLLHALDQQE  60
LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK  120
CMFSPFHDLV FVQLSPEEAT EAISFKNVTL EEVPGSSIIK ALTTLIRKPG FSPFPHIYLK  180
AGSALLDIFQ ARPSRFPISS QELFSILDDA SEKTFLSGTA ISMQRYIFDG EAGKIGLESK  240
NLVACTSFLV EQKLLKAWHA DKDTEALRLQ KLLVEEEEAA QRRQTELLER KRQKKLRQKE  300
LKEKDQRHGE KVDVTENIDE TLEAVPLVET SSPSATFDSD TASSDMLDHA CLSLESFQLS  360
NMDVSADPES QTGVNFGHVD SVSGPNVERP VVQGNGSRRA VAQWQLSPKS QRGVPNGFHG  420
GHSSQTLKHS STKHHGNHRD ARAASSGNRV WSRKPKPEYD GRSLKAGEQK EASEPDQIKN  480
REVLIGSIPV NLGNCCQESN NQAGVHDDCL SEKGQMPKDN SQDKTNKPDL VQSGTNRSTV  540
KLWRPVSRNG TKGPMPIQNG SKESDINVVA EKGNSQNPYS ENCEGSCVVD GHNVGNGNDS  600
THPDETGRLG FSSHAAKDFL AQRWKDAIAA DHVELVLFQD SEPPRCPENQ NDREVAATHP  660
SRFKRSILGN AENRLVNGEA FDLPTAGAAK VRRRTKHDKG VKIKYIPKPS AVAYRPFLFS  720
LSCVFRTVSM ASWMRPTDQT SRFLDRHFVY EGAFVMSFRV TAFEVEIEKE KTADPTDLNH  780
PEEREHVYKQ QNDDVPASSL KYLNPKRGQT METASRANRI SFWQLNALIV MVVLAARGLV  840
SPLDLAFPAS IRLPFKRPAG LQRRGHNGQN RPGFRRRVGP RPADSVYISR VFGRRPRRHQ  900
SGCPARVFTH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	295	ERKRQKKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.10638	0.0	bud

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376597.1	0.0	uncharacterized protein LOC103439767
TrEMBL	A0A498JGX4	0.0	A0A498JGX4_MALDO; Uncharacterized protein
STRING	XP_008376597.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-124	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	MDP0000291317