PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000290147
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 430aa    MW: 46793 Da    PI: 4.4094
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000290147genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.24.6e-37136234297
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                    lfqrlw++eDei lLqG++d+++++g+   + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgk+ sf+++hdq +fe+s+k
  MDP0000290147 136 LFQRLWTDEDEIELLQGFLDYTTQRGSrgsHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLSKIASGKDLSFKSPHDQATFEISRK 231
                    79***********************997634455************************************************************** PP

         DUF573  95 iWg 97 
                    iW 
  MDP0000290147 232 IWS 234
                    **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-35137234IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAPDQDDAVL PEGDLSSSSQ DDEEEEDDVV DEDEEEXDVE DDDDVLNDDV INSASPSTSS  60
AGATDSIPVA IATATPTVTV ALPARAPPTV PLTLTSAPTT VIANDAVLSS DPKRHPALSS  120
QPEEKKPAAL DDSRRLFQRL WTDEDEIELL QGFLDYTTQR GSRGSHGQND TALFYDQIKS  180
KLQLDFNKNQ LVEKLRRLKK KYRNVLSKIA SGKDLSFKSP HDQATFEISR KIWSNIGRIG  240
ADENALDDED PPNNPNFSXC EIKAEEAAGF AGDKKSTPRS RKRSRIQPRA DEKRPPPPLR  300
GGFVEPSPVI KDNNNSINIS NNGGAGXGNN CNVQGLIEET VKSCLSPLFK ELLSNAMGGG  360
PSRGFGGLAF NPIPLSFGGL PMNLNFGGGE VADDKWRKQQ ILELEVYSKR LDLVQNQIKV  420
ALDELRSNGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.63680.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350630.20.0probable transcription factor At3g04930
TrEMBLA0A498IK990.0A0A498IK99_MALDO; Uncharacterized protein
STRINGXP_008350630.10.0(Malus domestica)
STRINGXP_008388652.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-56DNA-binding storekeeper protein-related transcriptional regulator