PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000288465

Common Name

AP2D24, LOC103449153

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ERF

Protein Properties

Length: 322aa MW: 35971.9 Da PI: 4.7373

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000288465	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.8e-19	88	136	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g MDP0000288465 88 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 136 9*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.62E-22	87	145	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.3E-32	87	145	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.775	87	144	IPR001471	AP2/ERF domain
SMART	SM00380	5.8E-39	87	150	IPR001471	AP2/ERF domain
CDD	cd00018	1.90E-33	88	145	No hit	No description
Pfam	PF00847	6.8E-12	88	136	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.6E-12	88	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.6E-12	110	126	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0034059	Biological Process	response to anoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDEMDDECGR MCGGAIIANF IPRDRRRCVT ASDIWPDSPF AKFDPDTFFD CNPTPVNRTD 60 STPRKLSQPI SGDVQEEKPA KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA 120 EEAARAYDRE ARKIRGKKAK VNFPNEDDHL PAKTYLRNPN TNLYQPKSFD LGFGYDLNQI 180 ATFPSNSMSI EFNSKANVNT DPIVISGEEN SGCGSDGAFS STGFLGCNQN GSGGCHGGAE 240 LTEVEETKEG KRSLEAIARM EEDEVQKLSE ELMAYESMMK FYQIPYLDGQ STAAPQNPPP 300 QESTLGDDLW SFDDDHSVPA SV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-22	88	144	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	2e-21	88	146	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12917	0.0	bud\| cell culture\| fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU732448	0.0	GU732448.1 Malus x domestica AP2 domain class transcription factor (AP2D24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306945.1	0.0	ethylene-responsive transcription factor ERF071-like
TrEMBL	D5L108	0.0	D5L108_MALDO; AP2 domain class transcription factor
STRING	XP_008386662.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6771	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	3e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	MDP0000288465
Entrez Gene	103449153

Publications ? help Back to Top
Tacken E, et al. The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening. Plant Physiol., 2010. 153(1): p. 294-305 [PMID:20237022]