PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000288401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 478aa MW: 53062.1 Da PI: 7.5349 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 159.3 | 5.7e-50 | 29 | 123 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr++Pianv+rim+k+lP +akis+daket+qe vse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+ MDP0000288401 29 VREQDRYMPIANVIRIMRKILPPHAKISDDAKETMQESVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLRRYRESES 123 59******************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.8E-48 | 25 | 130 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.2E-36 | 32 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-24 | 35 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.3E-14 | 63 | 81 | No hit | No description |
PRINTS | PR00615 | 4.3E-14 | 82 | 100 | No hit | No description |
PRINTS | PR00615 | 4.3E-14 | 101 | 119 | No hit | No description |
SuperFamily | SSF55008 | 4.97E-14 | 247 | 318 | IPR006121 | Heavy metal-associated domain, HMA |
Gene3D | G3DSA:3.30.70.100 | 3.4E-17 | 248 | 318 | No hit | No description |
PROSITE profile | PS50846 | 18.141 | 252 | 318 | IPR006121 | Heavy metal-associated domain, HMA |
Pfam | PF00403 | 8.1E-6 | 255 | 314 | IPR006121 | Heavy metal-associated domain, HMA |
CDD | cd00371 | 8.83E-11 | 255 | 317 | No hit | No description |
PROSITE pattern | PS01047 | 0 | 257 | 286 | IPR017969 | Heavy-metal-associated, conserved site |
Gene3D | G3DSA:3.40.50.1000 | 3.5E-6 | 405 | 440 | IPR023214 | HAD-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030001 | Biological Process | metal ion transport | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MPSQTPATLP NSAGNSDNNT EQKAPQCLVR EQDRYMPIAN VIRIMRKILP PHAKISDDAK 60 ETMQESVSEY IAFITGEANE RCQREQRKTV TAEDVLWAMG KLGFDNYVEP LTIYLRRYRE 120 SESSDRSQFV TREEPQLMDY CPPGHAGPQV AMMPPPPPSY GPENYFGPQH GPPMYDPSMM 180 GMFRDGSSSG AGGGGSSSAS GAQVYLYVLA WLQSEFSSFE FKDKLVPARK IKEAVEDAGF 240 PVSEFPQQDV AVCXLRIKGM ACTSCSESVE CALRMVDGVK NAVAGLALEE AKVHFDLNLT 300 DTSCIIQGIE DAGFGAELKK VAITYDKDLT GPRSLIRCIE EAGRESKVYQ ASLYVPPRPR 360 EAERKREIQM YRNQFFLRPX RFLYFHSQCN PYGSNGCNRE GCFARCLIKG GNAHQKAHKV 420 KTVAFDTTGT LTVGKPVVVN SVMQCSSPIA QWRSYVLSLL PQRLVPIFQI CTLKASLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-53 | 29 | 120 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498KH30 | 1e-119 | A0A498KH30_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 2e-51 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000288401 |