PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 668aa    MW: 76042.7 Da    PI: 6.3655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.71.4e-1152966663374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL++cA+a +s d++ a++lL+++++++sp+gd+++Rla+yf+ +L+arl++  +  y+ l + + +    +e l+a++++++ +P+  + h+  
  MDP0000287041 296 TLLTQCAQATASYDQRSASELLKQIRKHSSPYGDATERLAHYFADGLEARLVGARTPSYSPLLSIQIP---AAEILKAHQMYVNYCPFKHMLHFFS 388
                    79***************************************************999999999888887...89*********************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpps+R+T+++ p++g   +e++ etg+rL+k+A++++v+fe++v  a+++e+++le
  MDP0000287041 389 NRTIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPSIRLTAIELPQPGfrPTERVDETGRRLKKYAARFNVQFEYRV-FAQKWETIQLE 483
                    ******************************************************9****************************9.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+++++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++   +  +ns+ F++rf eal+++sa+fd++ea++pre+e+r++ E++
  MDP0000287041 484 DLKIDRNELTVVNCMHRLKHIPDETVVVSSPRDLVLKLIRRINPDLFIHGVVNGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRMMFEKA 579
                    ************************************************************************************************ PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + g++i+nvvaceg er+er et+++W+ r ++aGFk+vpl+++  k +k +l+ ++  d + v+e+ +++++gWk+++++ + +W+
  MDP0000287041 580 IYGKDIMNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMHyHDDFLVDEDGEWMLQGWKGKTIFGLAFWK 666
                    *****************************************************99998999*************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.267268645IPR005202Transcription factor GRAS
PfamPF035144.8E-113296666IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MQNFQFGSTQ FQVNHEPTNP LFLPTTPEHP TDSGCSNPGS DGDSFDMSDC NHSVIKYISD  60
ILLEEDLEDQ PCMLQNCLAL QAAEKSFYDV LNPKDPPSPD QPPLPVYQSF EHSDDDSSQS  120
YSSNDSVAAK TDSVFDSSET LLVSNSTSGN FGGVGEAGNL VPNLKHGIID LERYQLVPPG  180
DNTLRRNSAP EPENDGYISA NRLKGKKNHQ REDGDYEDGG RSNKQSAALG DDTEPQEMFD  240
RVLLCHVNHT HGSCIRDKPL SSEGSEKLQP NKQSKGSKTT RLKKQNNYRE VVDISTLLTQ  300
CAQATASYDQ RSASELLKQI RKHSSPYGDA TERLAHYFAD GLEARLVGAR TPSYSPLLSI  360
QIPAAEILKA HQMYVNYCPF KHMLHFFSNR TIIKLAEKAT RLHIVDFGIS YGFQWPCLIQ  420
RLSERNGGPP SIRLTAIELP QPGFRPTERV DETGRRLKKY AARFNVQFEY RVFAQKWETI  480
QLEDLKIDRN ELTVVNCMHR LKHIPDETVV VSSPRDLVLK LIRRINPDLF IHGVVNGTYN  540
SPFFVTRFKE ALYHFSAMFD MFEATIPRED EQRMMFEKAI YGKDIMNVVA CEGLERVERP  600
ETYKQWQVRY HRAGFKQVPL DQELLKRVKI MLKAMHYHDD FLVDEDGEWM LQGWKGKTIF  660
GLAFWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-482766671380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.9550.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384949.10.0scarecrow-like protein 30
TrEMBLA0A498KAI20.0A0A498KAI2_MALDO; Uncharacterized protein
STRINGXP_008359006.10.0(Malus domestica)
STRINGXP_008384949.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein