PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000287041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 668aa MW: 76042.7 Da PI: 6.3655 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 377.7 | 1.4e-115 | 296 | 666 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+a +s d++ a++lL+++++++sp+gd+++Rla+yf+ +L+arl++ + y+ l + + + +e l+a++++++ +P+ + h+ MDP0000287041 296 TLLTQCAQATASYDQRSASELLKQIRKHSSPYGDATERLAHYFADGLEARLVGARTPSYSPLLSIQIP---AAEILKAHQMYVNYCPFKHMLHFFS 388 79***************************************************999999999888887...89*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpps+R+T+++ p++g +e++ etg+rL+k+A++++v+fe++v a+++e+++le MDP0000287041 389 NRTIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPSIRLTAIELPQPGfrPTERVDETGRRLKKYAARFNVQFEYRV-FAQKWETIQLE 483 ******************************************************9****************************9.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L+++++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++ + +ns+ F++rf eal+++sa+fd++ea++pre+e+r++ E++ MDP0000287041 484 DLKIDRNELTVVNCMHRLKHIPDETVVVSSPRDLVLKLIRRINPDLFIHGVVNGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRMMFEKA 579 ************************************************************************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + g++i+nvvaceg er+er et+++W+ r ++aGFk+vpl+++ k +k +l+ ++ d + v+e+ +++++gWk+++++ + +W+ MDP0000287041 580 IYGKDIMNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMHyHDDFLVDEDGEWMLQGWKGKTIFGLAFWK 666 *****************************************************99998999*************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.267 | 268 | 645 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-113 | 296 | 666 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MQNFQFGSTQ FQVNHEPTNP LFLPTTPEHP TDSGCSNPGS DGDSFDMSDC NHSVIKYISD 60 ILLEEDLEDQ PCMLQNCLAL QAAEKSFYDV LNPKDPPSPD QPPLPVYQSF EHSDDDSSQS 120 YSSNDSVAAK TDSVFDSSET LLVSNSTSGN FGGVGEAGNL VPNLKHGIID LERYQLVPPG 180 DNTLRRNSAP EPENDGYISA NRLKGKKNHQ REDGDYEDGG RSNKQSAALG DDTEPQEMFD 240 RVLLCHVNHT HGSCIRDKPL SSEGSEKLQP NKQSKGSKTT RLKKQNNYRE VVDISTLLTQ 300 CAQATASYDQ RSASELLKQI RKHSSPYGDA TERLAHYFAD GLEARLVGAR TPSYSPLLSI 360 QIPAAEILKA HQMYVNYCPF KHMLHFFSNR TIIKLAEKAT RLHIVDFGIS YGFQWPCLIQ 420 RLSERNGGPP SIRLTAIELP QPGFRPTERV DETGRRLKKY AARFNVQFEY RVFAQKWETI 480 QLEDLKIDRN ELTVVNCMHR LKHIPDETVV VSSPRDLVLK LIRRINPDLF IHGVVNGTYN 540 SPFFVTRFKE ALYHFSAMFD MFEATIPRED EQRMMFEKAI YGKDIMNVVA CEGLERVERP 600 ETYKQWQVRY HRAGFKQVPL DQELLKRVKI MLKAMHYHDD FLVDEDGEWM LQGWKGKTIF 660 GLAFWKPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-48 | 276 | 667 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.955 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008384949.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A498KAI2 | 0.0 | A0A498KAI2_MALDO; Uncharacterized protein | ||||
STRING | XP_008359006.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008384949.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000287041 |