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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000286456 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 333aa MW: 36309.3 Da PI: 9.6017 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 108.7 | 3.3e-34 | 51 | 107 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++
MDP0000286456 51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHRRDQY 107
689******************************9********************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 1.0E-28 | 52 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 4.0E-23 | 54 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 5.8E-31 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.717 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 7.5E-27 | 194 | 263 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.34E-16 | 197 | 264 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 1.1E-25 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 333 aa Download sequence Send to blast |
MNFTTVTATI QTPDTDTEPP SPSDPKSNFF SSRSLSFTNG AFQPQSTPTM VVAYKECLKN 60 HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHRRDQYRPK SNVIRNPHRL 120 LPAPKPAHYN HSSSPSPSSS PNPTLSPQSP PPVSHLPPSY FASPPQMLLA LSSGFSGPSD 180 EHPHQHQLNP TAVKKTEKYP GEKKRSRTRF SQEQKEKMLS FAEKVGWRLQ KSEERLVEDF 240 CSEVGIGRGV FKVWMHNNKH GRRRLERLGS GNGSLGDGGN MNKNVSEING DGERLGFDSM 300 NAHIASYNVN ANPLNEGSRA SFHLSTNGSS SSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 5e-20 | 204 | 260 | 18 | 74 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 260 | 267 | GRRRLERL |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.23292 | 0.0 | bud| cell culture| fruit | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008389477.1 | 0.0 | zinc-finger homeodomain protein 11-like | ||||
| Swissprot | Q9SEZ1 | 4e-65 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
| TrEMBL | A0A498I8U0 | 0.0 | A0A498I8U0_MALDO; Uncharacterized protein | ||||
| STRING | XP_008389477.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF1979 | 31 | 88 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69600.1 | 7e-61 | zinc finger homeodomain 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000286456 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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