PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000285581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27094.7 Da PI: 9.9 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.7 | 4.7e-26 | 165 | 214 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgk ye++s MDP0000285581 165 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKXYEFAS 214 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.824 | 156 | 216 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-37 | 156 | 215 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-27 | 157 | 224 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.15E-36 | 157 | 236 | No hit | No description |
PRINTS | PR00404 | 3.5E-27 | 158 | 178 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-24 | 165 | 212 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-27 | 178 | 193 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-27 | 193 | 214 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSFIGPVIED AKVFMSRITG VTTAQVCRQA NDLARRLANF LCMIXSLGLG LRNLQTFWPI 60 ILKFIDRVEF VRLVVXVVGG DDDGSGDDGG GXXGSDGAAT MLRVCWWRQY SGNDRGGSGD 120 REARVXRMVV VMAVXGVRLC GCNETLKQKE HKGADMGRGK IVIRRIDNST SRQVTFSKRR 180 KGLIKKAKEL AILCDAEVGL VIFSSTGKXY EFASNRTTLK EEIQIWKYKN NIGADLEIYI 240 TMQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 156 | 214 | 1 | 59 | MEF2C |
5f28_B | 2e-16 | 156 | 214 | 1 | 59 | MEF2C |
5f28_C | 2e-16 | 156 | 214 | 1 | 59 | MEF2C |
5f28_D | 2e-16 | 156 | 214 | 1 | 59 | MEF2C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 4e-32 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000285581 |