PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281533
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 775aa    MW: 86885.3 Da    PI: 8.0313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281533genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002594115223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C+ C+k+F++  +L  H+ +H
  MDP0000281533  94 SCQVCNKTFPSMKSLCGHMGSH 115
                    7******************887 PP
2zf-C2H212.60.00041166188123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+C k+F++   L  H r+H
  MDP0000281533 166 HVCPICLKTFPTGQALGGHKRSH 188
                    79******************999 PP
3zf-C2H211.60.00087393414223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  C+k F++  +L+ H+r+H
  MDP0000281533 393 SCYVCKKDFPSIKSLHGHMRLH 414
                    69******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.13961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2033970IPR007087Zinc finger, C2H2
SuperFamilySSF576678.48E-64061No hitNo description
PfamPF139127.1E-44057IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576678.48E-688115No hitNo description
SMARTSM003550.00593115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.99593120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139126.6E-695117IPR007087Zinc finger, C2H2
SuperFamilySSF576675.48E-6165188No hitNo description
PfamPF139127.9E-12165189IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871166188IPR007087Zinc finger, C2H2
SMARTSM003550.068166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SuperFamilySSF576675.48E-6334361No hitNo description
PROSITE profilePS5015710.616339366IPR007087Zinc finger, C2H2
SMARTSM003550.66339361IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-6340361IPR007087Zinc finger, C2H2
PROSITE patternPS000280341361IPR007087Zinc finger, C2H2
SMARTSM003550.71392414IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954392419IPR007087Zinc finger, C2H2
SuperFamilySSF576678.03E-6393414No hitNo description
PfamPF139122.0E-5394416IPR007087Zinc finger, C2H2
PROSITE patternPS000280394414IPR007087Zinc finger, C2H2
SuperFamilySSF576678.03E-6702729No hitNo description
SMARTSM0035540707729IPR015880Zinc finger, C2H2-like
PfamPF139120.0028707729IPR007087Zinc finger, C2H2
PROSITE patternPS000280709729IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MKTFQRKILI EYLNGADDTK GKELVLYNGH KTQAVDRSRT CSECGMRFRN GQALGGHISI  60
HFQRHLGPKN NKKFKVKQQQ LLLEYPSWNN SRLSCQVCNK TFPSMKSLCG HMGSHRQRAQ  120
SPPPSSSLSS ADQYSDGDSY IDSASKHYKY AKSKKGKFLD GYKGHHVCPI CLKTFPTGQA  180
LGGHKRSHYY KGGPVLKAAA AAKNKVASTN GXEDSAKIKV ASADDREDCV IIDPGSQHWT  240
DETIHVASRR ILLDLDLNKP PKEDDDEKRY PIGESTWDLK AEKNKDLKED YEEEDQEIMD  300
DDDVHAQEIE EQVALRGDDY HKGKQVVLDS DVHHRSGDRV CEQCGKRFQN GKALGGHRKV  360
HLNQSLLPKK NKALFKQKKK HGSSKGGSSS EVSCYVCKKD FPSIKSLHGH MRLHRERDWK  420
GVRPPGAVQP LSEENTDNDA AIFLVNWRNI EQRRRIAYQR DPNGEDKVGE FGLKKLIEES  480
PVGYKGNPSS KNIKFDDDSK KITMEGSKSF GGAKPKKDFS LFGQTHKQIS RKPQEFRVTR  540
SDATLSDMNV DESAGFSSKY AAHQVSESAL EKAIEESPGG YKGNKTSEKS RSESVNFVPN  600
KLSIGGKEKA SVDDDDDGHD DNDENVDQTS WKVKLKKAMK EVSKTGKKPT KDXALNDQTH  660
YQISRRTQEF GAKYAERENY NGPSATCNQV LERAEEAEAV EHETKEFVCN ICPCKFSTGQ  720
APGGHKRCHN YRVPVEEAPE TAEVAPVAEE DGEITTVPEK LDLDLNQLPY ESNDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358936.20.0uncharacterized protein LOC103422653
TrEMBLA0A498K8B00.0A0A498K8B0_MALDO; Uncharacterized protein
STRINGXP_008358936.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16199410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-14C2H2 family protein