PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000279943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25679.6 Da PI: 10.1427 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 140 | 189 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW+AeIrdp+ +rkr +lg+f+t+e+Aa+a+++ + l+g MDP0000279943 140 RFVGVRQRP-WGRWAAEIRDPN---QRKRLWLGTFDTEEDAAAAYDRTSLMLRG 189 589******.**********93...36*******************99888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.4E-31 | 140 | 203 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.95E-28 | 140 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-28 | 140 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.273 | 140 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 140 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 141 | 197 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.3E-9 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-9 | 163 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSFFPLRFFI SLHHQIPNSI PPPSNSMSTV QINXSVANSN VQFSEQTTAL AKPVIHETPY 60 PTRIQPKLVR IIHADADATD SSSDDNEDSV VPAVKRXVRE INLEVPSPSS ASSSPPCSGC 120 PKLSKRAKLP PKSGPGRRER FVGVRQRPWG RWAAEIRDPN QRKRLWLGTF DTEEDAAAAY 180 DRTSLMLRGP RAVTNLPGAG ETVVADEVVA AATVGPWGRR RSICRRGEGA AYCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 139 | 197 | 4 | 63 | ATERF1 |
3gcc_A | 3e-18 | 139 | 197 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30232 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732427 | 0.0 | GU732427.1 Malus x domestica AP2 domain class transcription factor (AP2D3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358019.2 | 3e-95 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A498H9G9 | 1e-147 | A0A498H9G9_MALDO; Uncharacterized protein | ||||
STRING | XP_008358019.1 | 7e-93 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 2e-23 | cytokinin response factor 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000279943 |