PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000275309
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 799aa    MW: 86185.5 Da    PI: 7.946
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000275309genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.83.1e-15562617459
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                    +kr+rr+ +NRe+ArrsR+RK+a++ eLe+ v +L  e + L k+l   ++++++ 
  MDP0000275309 562 VKRARRMLSNRESARRSRRRKQAQMSELETQVGQLRVEHSGLLKRLTDVNQKYDNA 617
                    79*******************************************99999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.703.9E-9853304IPR013785Aldolase-type TIM barrel
SuperFamilySSF513664.52E-8753293IPR011060Ribulose-phosphate binding barrel
PfamPF002902.0E-9157304IPR002028Tryptophan synthase, alpha chain
TIGRFAMsTIGR002624.1E-8959303IPR002028Tryptophan synthase, alpha chain
HamapMF_0013135.35963312IPR002028Tryptophan synthase, alpha chain
CDDcd047243.83E-11367303No hitNo description
PROSITE patternPS00167097110IPR018204Tryptophan synthase, alpha chain, active site
SMARTSM003383.3E-17559623IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.68561615IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-10561614No hitNo description
PfamPF001703.2E-13562615IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-10562614No hitNo description
PROSITE patternPS000360566581IPR004827Basic-leucine zipper domain
PfamPF124988.5E-27630751IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000162Biological Processtryptophan biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009630Biological Processgravitropism
GO:0009735Biological Processresponse to cytokinin
GO:0042742Biological Processdefense response to bacterium
GO:0052544Biological Processdefense response by callose deposition in cell wall
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004834Molecular Functiontryptophan synthase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MAASSSLKFA AGFLQLKKPQ NPLLLRSPNQ VSTLSTKKFA PMAALTATPA VSLSQTFINL  60
KEQGKVAFIP YITAGDPDLS ITAEALKVLD SCGSDIIELG VPYSDPLADG PVIQAAATRS  120
LARGTNLNAI ISMLKEVIPQ LSCPIALFAY YNPILKRGIP EFMSTIKDVG VHGLVVPDVP  180
LEETEILRKE AVKNNIELVL LTTPTTPIDR MKAIAEASEG FLYLVSSIGV TGARASVNER  240
VPALLKEIKE TTKKPVAVGF GISKPEHAKQ VAGWGADGVI VGSAMVKLLG EAKTPEEGLK  300
EVRXSSTQPT KNWIFRTFTP AQSMHSVFTA DDSSDTFWAL SSPAEMNRSA SEWAFEQFLD  360
EFTTPAATPR QSVAEQFPVS SAASCSVASQ SSTSKRDDVD EEVVEIKKPD RHRHRQLQPP  420
QQLNHPPPAA LDPAPTAPIN XDQYREFLKN QLDLACAAVA LSRASSLTPV DLGNLAENPS  480
LVSKPSQLAP TRSLDKGAGN ALPVPQNEXD TSPHGVSALP AAQRRTPVLS KQTTSGSSKE  540
DSDDDDLEGD IEINENMDPS XVKRARRMLS NRESARRSRR RKQAQMSELE TQVGQLRVEH  600
SGLLKRLTDV NQKYDNAAVD NRILRADIET LRAKVKMAEE SVKRVTGINP LLLAMSNVAN  660
AGMPPVSNPM NASTNAAVPM QPNSNQLFHP GVPSMTTTPL HHQRLETGFH ANSPISLVGN  720
RQGNAGQPVI TGSNMAHNSS MPHTGNIDHM PSSSSSHGQE WVKHCQVGTL SSLTPSQRIR  780
SRTGCRGLPI FQERGXTAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tjr_A1e-104533024249BX1
1tjr_B1e-104533024249BX1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1575582RRSRRRKQ
2577582SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25140.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372296.20.0light-inducible protein CPRF2-like isoform X1
TrEMBLA0A498JYX10.0A0A498JYX1_MALDO; Uncharacterized protein
STRINGXP_008372296.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF340923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.13e-49basic leucine zipper 25