PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272823
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 651aa    MW: 73283.1 Da    PI: 6.1834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272823genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.11.7e-2331333127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    + +rFhPt++e v ++L kk+++++ ++  +++ +d+ k+ePw+Lp+       ++ k wy Fs+   k+ +++r nr tk+g Wk   k+++v s
  MDP0000272823   3 AAIRFHPTEDEKV-DFLSKKMKSHNSQACLFLPFIDVRKFEPWELPEhmfpDSPHHAKAWYSFSPCGYKSINSRRFNRETKKGSWKMNSKQRDVGS 97 
                    568**********.9**********999888***************535553344778************************************99 PP

            NAM  95 kkgelvglkktLvfy.....kgrapkgektdWvmheyr 127
                      +  +  k+tL+f      +g+++k++ t W mhey 
  MDP0000272823  98 --KYFTCKKRTLTFQiktfqEGSKSKSVPTGWKMHEYI 133
                    ..55677788999988887789999************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.2581161IPR003441NAC domain
SuperFamilySSF1019412.48E-254161IPR003441NAC domain
PfamPF023652.5E-124132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVAAIRFHPT EDEKVDFLSK KMKSHNSQAC LFLPFIDVRK FEPWELPEHM FPDSPHHAKA  60
WYSFSPCGYK SINSRRFNRE TKKGSWKMNS KQRDVGSKYF TCKKRTLTFQ IKTFQEGSKS  120
KSVPTGWKMH EYICIKPKRG SSPHQERDQQ RDLVLCVLKY KPVDSKSNTG TXIRGDFADX  180
TGNRGYIASS XGDDEAXTAA AMNQDDGEPG GGSSSSDFIX KSLCDMIQEW QSCAPAVECL  240
NSXLPLHEQP QLGHSLDICS HELLDPGTGG CITYSSDNQA AATNHIIPDT EEILASKQLE  300
GSAVLGSGNH DDGEPCSGIS SDFNDHAVDD MQEFDQLDKL LDLPLSPPEL SQPHQLENVP  360
GVHSGKFSNW PSPIGVNTSY VTNKNNIATN CENEPVINVA FNSYNRATDX RISEVYSQAE  420
ENLXLPFQXF DQPQNYTWQS PMLFSEVGEL LHANNYIGCN ESQFLDMEEH QEMQMVEMLS  480
GILPFSEHDE SRQCRNVFSH KRYSKMMSSS STGILPFSEH DESRQCSNVF XHKRYSKMVL  540
PLSTPLQIFL RRVALYPTSQ TXHNRNIHQH PSLSAHMEML QXESECRAVS RNKDSEAAAS  600
ALFFPLFSLV GDVVRGIFSR GLPLFYGGHR FGGSRRMEWP CPSSTLGLEM V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-13613220138Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955761.10.0uncharacterized protein LOC103423046
RefseqXP_028955762.10.0uncharacterized protein LOC103423046
TrEMBLA0A498KJE20.0A0A498KJE2_MALDO; Uncharacterized protein
STRINGXP_008359365.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1887626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-19NAC family protein