PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000271744
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 629aa    MW: 69307.4 Da    PI: 7.4869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000271744genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05143164223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  Cgk F++  +L  H+r+H
  MDP0000271744 143 VCCVCGKNFPSMKSLFGHMRSH 164
                    6********************9 PP
2zf-C2H211.20.0011412434123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C k+F+++  L  H+++H
  MDP0000271744 412 YKCNLCAKCFPSHQALGGHMSSH 434
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8296794IPR007087Zinc finger, C2H2
SMARTSM003558.16789IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-56989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349142169IPR007087Zinc finger, C2H2
SMARTSM003550.092142164IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.6E-8143164No hitNo description
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
PfamPF139123.0E-6144166IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-8407434No hitNo description
PfamPF139122.5E-6411435IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575412439IPR007087Zinc finger, C2H2
SMARTSM003550.014412434IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280414434IPR007087Zinc finger, C2H2
PfamPF139127.5E-13478502IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494479501IPR007087Zinc finger, C2H2
SMARTSM003550.028479501IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280481501IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDIEHQETRF PPLTASDQER KPAKILSREE MESNNEGMFV KLKVAKPEPL GQNPQNFSAA  60
PLPEFTRFCE VCFKGFSSGK ALGGHKRMHV QANRELFNQS RKNTISSKPN NSKPSNSNVG  120
SSNAGGVLGI GGNSSTISNM KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPTAKN  180
SSSSTVSDAV PDQSNRKAQE DQIESDETFF RSKSSVLNLS KTLPKWSQTA RRGRKSGSTG  240
FESNSDQSVS GLDSRSPRTV EEDEEQMEEA VHDLLMLAQA NPLEGGGADE TMYEVTNSNF  300
LITTNQDREG GLPYHGHTAP STVGSTNKRK GASSEVKRSE KKWYDAYGGG FGQEKSTVKN  360
FLKLGLMEEE NIGNYNNMED ELSDSQNSES IAVVRRKRRK MKLVDLEGRL RYKCNLCAKC  420
FPSHQALGGH MSSHNKLKGI TVAHSSMEDQ SAXADDPAAE DRVHGDEAER VALDHLQHHQ  480
CKICNKTFPT GQALGGHKRC HWTGPTEQQQ QQVVVVGPSE QLXKQVVVVG PSEQLQXQLQ  540
AHSSQTIVGG RGGGKVLNFD LNELPPMEED NQEGAATKPQ QNPTPTHKSS RPKPVFSLHF  600
YNLEPGNPSF QLVVLHPVQD EARKPSEEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344757.30.0hypermethylated in cancer 2 protein-like
TrEMBLA0A498K9120.0A0A498K912_MALDO; Uncharacterized protein
STRINGXP_008344757.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-20zinc-finger protein 2