PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000269374

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 614aa MW: 66345 Da PI: 6.8597

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000269374	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121	1.3e-37	503	595	5	103
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 ++ h+++hTkv gR+RR+R+sa+caar+F+L++eLG+++d++tieWL+qqak+ai++ tgt++++a+++ + s +ss+s+ s++ +sk MDP0000269374 503 QTIHKDRHTKVKGRGRRIRMSATCAARVFQLTRELGHKSDGETIEWLFQQAKHAIIATTGTGTIPANFStLNISLRSSGSTFSAP-------PSKT 591 567***************************************************************9997777777777633333.......3333 PP TCP 100 sqks 103 +++s MDP0000269374 592 APHS 595 3333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-36	506	590	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.956	506	560	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MYECLGPAAI KGSSHKPNQI IAAEALKWAT ECTSSHQDFS FLPWIPPPKH STIIIPISSL 60 PLQPTNSQKP RPSPNDSLSL HNSRNFPDED EDEKSYLRSE HSNRLLQAPN LSHSYSRTHK 120 LRTGSSTSSE FFYLGTLVNS RSLEERVDSG GSVGRSAKLE TRKVDSPDLQ PLXXLSRQIS 180 RLSRCKNAEL GSTQDRDDEE EEEEEEFYSP RGSSGDRESS NENXSGSRRI LAAVXGGVFD 240 RRSSETTSCS CSSXELGSPP RSHSISLSPP XTLSPNRRPE EPKLPEPSAT RYTTPFGDVN 300 VRSPSXTPLS SPERAADEYP SASDRNGXSP SMSSLSSSPE KGLEKTPDAP LKVSVVSDQS 360 SPISSPERGF XNNPHASSKV SVVTDQSSLI SSPERHFXIX PDALSKVSVV SGQSSPISSP 420 ELXFGNNTDG LTKVTAFXDR NDQSPSPLSH CSSSXERESD GSDSKAXSFS PSSFGSSAAT 480 AFASFPANFS SFSTSSTSDP SGQTIHKDRH TKVKGRGRRI RMSATCAARV FQLTRELGHK 540 SDGETIEWLF QQAKHAIIAT TGTGTIPANF STLNISLRSS GSTFSAPPSK TAPHSFPGAL 600 ALAHHPHYDE GFAH

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MYECLGPAAI KGSSHKPNQI IAAEALKWAT ECTSSHQDFS FLPWIPPPKH STIIIPISSL  60
PLQPTNSQKP RPSPNDSLSL HNSRNFPDED EDEKSYLRSE HSNRLLQAPN LSHSYSRTHK  120
LRTGSSTSSE FFYLGTLVNS RSLEERVDSG GSVGRSAKLE TRKVDSPDLQ PLXXLSRQIS  180
RLSRCKNAEL GSTQDRDDEE EEEEEEFYSP RGSSGDRESS NENXSGSRRI LAAVXGGVFD  240
RRSSETTSCS CSSXELGSPP RSHSISLSPP XTLSPNRRPE EPKLPEPSAT RYTTPFGDVN  300
VRSPSXTPLS SPERAADEYP SASDRNGXSP SMSSLSSSPE KGLEKTPDAP LKVSVVSDQS  360
SPISSPERGF XNNPHASSKV SVVTDQSSLI SSPERHFXIX PDALSKVSVV SGQSSPISSP  420
ELXFGNNTDG LTKVTAFXDR NDQSPSPLSH CSSSXERESD GSDSKAXSFS PSSFGSSAAT  480
AFASFPANFS SFSTSSTSDP SGQTIHKDRH TKVKGRGRRI RMSATCAARV FQLTRELGHK  540
SDGETIEWLF QQAKHAIIAT TGTGTIPANF STLNISLRSS GSTFSAPPSK TAPHSFPGAL  600
ALAHHPHYDE GFAH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.28657	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008338227.2	0.0	formin-like protein 1
TrEMBL	A0A498KVJ6	0.0	A0A498KVJ6_MALDO; Formin-like protein
STRING	XP_008350770.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000269374