PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000266051
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 779aa    MW: 88580.7 Da    PI: 7.6065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000266051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-152273061699
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    + lp +f+++h  +k++s  ++l+ ++g +W v+++y+ +     +++GW+ F+++n+ k+gD +vF+l++r+e ++ v +fr+
  MDP0000266051 227 IGLPYEFVRTHL-NKQRSSNVILQILDGSTWPVNFKYDVTX---RFQNGWSVFARENNXKVGDLCVFELINRNELTFEVVFFRA 306
                    679*******94.4557779***************777766...58************************99999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-14213306IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-11217307IPR003340B3 DNA binding domain
PfamPF023627.2E-14226306IPR003340B3 DNA binding domain
CDDcd100178.04E-17227305No hitNo description
Gene3DG3DSA:2.40.330.102.8E-15227306IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647229307IPR003340B3 DNA binding domain
PfamPF007439.6E-8418467IPR020946Flavin monooxygenase-like
Gene3DG3DSA:3.50.50.603.2E-12420478IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519052.41E-10420481IPR023753FAD/NAD(P)-binding domain
SMARTSM010190.0019467553IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-16474554IPR015300DNA-binding pseudobarrel domain
CDDcd100179.38E-9477551No hitNo description
PROSITE profilePS5086310.447477553IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-15479554IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-10631694IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-9657691IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-8658698No hitNo description
PROSITE profilePS508638.952661700IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0004499Molecular FunctionN,N-dimethylaniline monooxygenase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
GO:0050661Molecular FunctionNADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDQGKWEIGT SSSHDPYAGK ECSGGLNLET GYEDHDDKSV EILDDLCPRK SRDKSLVMPK  60
LEETDKHDDD SNDDISRDSD EVQDDPTIPE EEETDYEDDE SVEILDDYSP CPRKTREKSP  120
LPCLHKKMRT CSSSKAAECN TNFPATKTQP YEIKKSFRSK DSYCSKSEVK KVGGLSSSQI  180
FQKRTPDVLG REHSLTKSEK ALALQRANAF KSEYLHFRLP FNHLISIGLP YEFVRTHLNK  240
QRSSNVILQI LDGSTWPVNF KYDVTXRFQN GWSVFARENN XKVGDLCVFE LINRNELTFE  300
VVFFRATEAK KCSSSAGPSD TSLSAFVSSN PFFRVTLGLG SSRVLRIPTS FSKHFIEKKX  360
QIVTLWVDDX MWHCWKLARL VGGHEGVAPG QLCTRKSREK SLLPCLQPFK NIRTSSTMLG  420
LEGFKGEAIH SSKYENGTKY GGKIVLVVGP GNSGMEIAYD LSNSGAYTSI VVQSPKVPMK  480
FVMKYGEELS SPVYLXLPCG SEWEIELRRC NGEVWFEKGW PEFSKFYSLD YAFWLVFGYE  540
GNSRFHVFIF DRSCTEVDYP IKLPXKEKTD YEDDESVEIL DDFPTSRRRK XERYSSLPCP  600
LPPKKKXKSY XRMHPLTEKD KAIALQRAIA FKSEKPHFKV AMQPSYIFGN LVNTLAQKVR  660
FKRGWLEFVR DNNLKTGDVC VFILIKGIEL AFEVVFYRGT EAANCSLSPG EXDFSTMKEV  720
GGLSSSQIFX KRTPDVLGRE HSLTKSEKAL ALQRANAFKS EYPSFPVAIQ PSYIHSSYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117PRKTREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947412.10.0uncharacterized protein LOC114820595 isoform X1
TrEMBLA0A498KIJ80.0A0A498KIJ8_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1657124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-21B3 family protein