PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000265846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 535aa MW: 55792.7 Da PI: 8.5998 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MDP0000265846 69 FVCEICSKGFQRDQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.5e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ MDP0000265846 145 WKCERCSKKYAVQSDWKAHMKTC 167 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.2E-6 | 68 | 91 | No hit | No description |
Pfam | PF12874 | 0.034 | 69 | 91 | No hit | No description |
SMART | SM00355 | 0.036 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 280 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 132 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.2E-6 | 140 | 166 | No hit | No description |
SMART | SM00355 | 77 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MGELDNSSSP LPTVSTASGG EASLTSSARE AMTRSEPPQK KKRNLPGMPD PEADVIALSP 60 TTLLATNRFV CEICSKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY VCPETSCVHH 120 NPTRALGDXT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALAEES AKTQTLMIGS DGSTNPSSNP TPSAKSTVVA SPPPPPHTPS 240 NTVVSPALSI QSSELPENPI GLSPPAPATT CLTTKAISTT ATATTSTGNC NNGSSVFASV 300 FAPSSASALM TQPPQASSPS SFTNQVSTLG RLDGSTTTSA INEPTSLSLS TSLYLSSSGF 360 SLFPTPDQQD HRDYAQPAAM SATALLQKAA EMGAAASNAS LLRGFGLSTT SSPSQDSSTT 420 LQWSKKPESG GGAHVGAELG LELLSTANVA QFTDLMMGPP SSFGGQPMTR DLLGLSIGSG 480 GGGGASAGGF SAFLNSFGGS SGAFNVXAPY GSGGAGGGSS QGESWEGAQD RKPNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-36 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 7e-36 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.22115 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028962489.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9SCQ6 | 1e-135 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A498J6D5 | 0.0 | A0A498J6D5_MALDO; Uncharacterized protein | ||||
STRING | XP_009365587.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-112 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000265846 |
Publications ? help Back to Top | |||
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