PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265560
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 337aa    MW: 36947.6 Da    PI: 3.9304
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265560genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.51.2e-121172011497
          NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                     +  + e+P  rik+i+k d  +++i +ea  l+s + +lf+  l+ rs   a e kr+ +k   +  av+r   + dfl+d+ p
  MDP0000265560 117 GNRIRPEFPNGRIKRIMKLDRGINKINSEALLLVSYSAQLFLEFLAERSAEVATERKRKVVKLEHMRVAVKRHRpTCDFLIDELP 201
                    55556799**************************************************************9975489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.66E-1683189IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-16121187IPR009072Histone-fold
PfamPF008082.8E-17123186IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAEEEIAARV EENPAGEEEN PAQEEEENPA GEEENPARDA EDNPADEEEN PAVEEGSPAA  60
EEENLAGEEE SPEQEEEENP AGEEENPAQE EEEENPAREK EKPAKGKGKV GEEEGNGNRI  120
RPEFPNGRIK RIMKLDRGIN KINSEALLLV SYSAQLFLEF LAERSAEVAT ERKRKVVKLE  180
HMRVAVKRHR PTCDFLIDEL PVPSQPSDHP ATDRSQGHSV ASSSAPAKRD RSRTAAARPA  240
PAGTCRIDGF FHKLTKKAPI QTEETPIETD EAPIETDEAP VETDDAPIES DDAPIEIDEA  300
PIETDDAPIE SDDVPIESDD VPIESDDAAI ESDEASN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158240.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017178973.21e-122transcription regulator complex subunit bur6-like
TrEMBLA0A498HPR11e-121A0A498HPR1_MALDO; Uncharacterized protein
STRINGXP_009372331.11e-122(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-40nuclear factor Y, subunit C13