PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264920
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 377aa    MW: 39084.1 Da    PI: 6.6358
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264920genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.3e-36911972105
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgka 90 
                    ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++        + +ss s++     ++
  MDP0000264920  91 PTRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTSSTSVED----NS 182
                    6899************************************************************88888444433333322222222221....22 PP

            TCP  91 aksaakskksqksaa 105
                    ++++a++k+++ s++
  MDP0000264920 183 SPTSATKKRKRPSNS 197
                    222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2996193IPR005333Transcription factor, TCP
PROSITE profilePS5136926.00397151IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTSYLEDQDE NGGASDLSTS TGDPGDNDHT NGDGVVSMQP NCEETXEFHS LKEEPIDSDP  60
QQPPQGHPIG MLPDTMQMPV PMSVQLPVSA PTRRSSTKDR HTKVEGRGRR IRIPATCAAR  120
IFQLTRELGH KSDGETVRWL LEHAEQAIIE ATGTGTVPAI AVSVGGTLKI PTTSSTSVED  180
NSSPTSATKK RKRPSNSEFV DVRKDAVSQS SGLAPVGPAA PQGLVPVWAV GGAGLIVPAN  240
AFWMGPVGSG AGSPGPQPQI WALSPTMTPV FNMAGAAGPI SSFVVNSGGG AGGVDVRAPS  300
PALSNSAAST STVGARAAKR SSTTMAPPSV SSSSNNRVAE AEVEVTLRVS GQPFFAGRPY  360
AHVVKNKFNP XNTPTLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.88160.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028956553.10.0transcription factor TCP9-like isoform X1
TrEMBLA0A498K0T30.0A0A498K0T3_MALDO; Uncharacterized protein
STRINGXP_009377907.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-63TCP family protein