PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000264809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26873 Da PI: 8.7224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.2 | 2e-08 | 17 | 51 | 18 | 55 |
AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 e rdp+ + r++lg+f taeeAa+a+ + ++k++g MDP0000264809 17 EFRDPR----KgVRVWLGTFNTAEEAARAYYREARKIRG 51 566763....349******************99999998 PP | |||||||
2 | zf-CCCH | 21.4 | 4.4e-07 | 161 | 180 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H MDP0000264809 161 CPFHLKTGACRFGQRCSRVH 180 ******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.751 | 1 | 59 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-17 | 7 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.18E-18 | 9 | 60 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-13 | 9 | 60 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-19 | 9 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS50103 | 11.732 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-5 | 160 | 180 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 5.0E-13 | 161 | 180 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 5.0E-13 | 180 | 200 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MCKKRSQLRG RGRTSTEFRD PRKGVRVWLG TFNTAEEAAR AYYREARKIR GKKAKVNFPN 60 EDDHLSAKTT RHENLAMEVK RKKQIEEEEE EEERTRTKAR EEEDELSRNQ QDSXRPTSNP 120 LPPQSEAFSD YKSSSMSAQQ LIESVAQQVP HFGTEQDKAH CPFHLKTGAC RFGQRCSRVH 180 FCPDKSSTLL IKNMYNGPGL AWEQDEGLEF SMWLPYIFVN AVLFMAAGVL LVH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12917 | 8e-77 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732448 | 8e-74 | GU732448.1 Malus x domestica AP2 domain class transcription factor (AP2D24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959391.1 | 1e-65 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like | ||||
STRING | XP_009362161.1 | 4e-69 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4713 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 3e-51 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000264809 |