PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000264681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 220aa MW: 25319.9 Da PI: 10.2409 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24 | 7e-08 | 165 | 189 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C +++rtGtCky ++C +H+ MDP0000264681 165 GKKDCLHYMRTGTCKYENNCLXNHP 189 6789****************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.446 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0091 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-5 | 165 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
KKVSKDKAKQ REELVENQVQ TESKKNVSKD KAKRREXLAV KQDQTESKVF KDKPRQRGEL 60 AEKQGQTKNK VFKDNAKQRG ELAEKQGQTR NKKMSMDKAK QSEELTEKQD QTGSKIIVYP 120 KFWFLLQLLG FHALHPXYCP GQRKXEPSVA PALKLNFLGL PIRPGKKDCL HYMRTGTCKY 180 ENNCLXNHPD PTPAEESHPQ FAYESHGIHS KTTEFITPVL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.6467 | 2e-99 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959736.1 | 1e-105 | vicilin-like seed storage protein At2g18540 isoform X24 | ||||
TrEMBL | A0A498JK69 | 1e-130 | A0A498JK69_MALDO; Uncharacterized protein | ||||
STRING | XP_008352151.1 | 6e-93 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 3e-14 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000264681 |